Amphiprion ocellaris (clown anemonefish): 111564841
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Entry
111564841 CDS
T06018
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03022
Basal transcription factors
aoce03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111564841 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
111564841 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111564841 (ercc3)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111564841 (ercc3)
Enzymes [BR:
aoce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111564841 (ercc3)
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111564841 (ercc3)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111564841 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
111564841
NCBI-ProteinID:
XP_023120441
Ensembl:
ENSAOCG00000009396
LinkDB
All DBs
Position
1:5390408..5401221
Genome browser
AA seq
783 aa
AA seq
DB search
MGKRDKGDREKKYKKRTYEEEDDEEEVVGSESQEAIPAAAGKQVDESSTKLDEYGAKDYR
VQMLLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIQLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDNVIRECRLRAADGTDTELITEVIHSKSAISKSVQEKGGASTSEQPTDGQIS
TQQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
TLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTRDDQQQLLQKVLAAS
DLDAEEEVVAGEVSARPQVSRRPGTMSSMSGADDTVYMEYQSRSSKASAASKSVHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaagggataaaggagatcgggagaagaagtacaaaaagcgaacctatgaagag
gaagacgatgaagaagaggtggtgggcagtgagtctcaggaggccatacctgctgctgca
ggaaagcaggtggacgagtccagtacaaaactggatgagtatggagccaaagactaccgt
gttcagatgctgttgaagaatgatcactcttcacggccactctgggtggctccagatgga
cacatctttctcgaggctttctcaccagtgtacaagtatgcccaggatttcttggtggcc
attgcagagccggtgtgcaggcctaaccatgtccacgagtacaagctgactgcatattcc
ctgtatgcagctgtcagtgtggggctacagacctctgatattgtggaatacctgcagaaa
ctcagcaagacctctgtacctgatggaattgtgcagttcattcagctctgtacagtgagc
tacggcaaagtcaagctggtgctcaaacacaataggtatttcgttgagagtgcctttcct
gatgtgatccagcgccttctgcaggacaatgtgatccgtgaatgtcgcctgcgtgctgca
gacggaacagacactgagctcattactgaagtcattcacagcaagtcagcaatctccaag
tctgttcaggaaaagggaggtgcctccacctcagagcagcccactgatggacagatatca
acccagcaggtccccgaggacatctttagctactatgagcagatggataaagaggaagag
gaggaagaagagactcagactgtgtcctttgaaattcgacaggagatgattgaagagctc
cagaagcgatgtattcagctggagtaccccctgctagcagagtacgactttcgcaacgac
acattaaacccagacatcaacatagacctgaagcccactgctgtgttgcggccctaccag
gaaaagagcctacgcaagatgtttgggaacggacgtgctcgatcgggggtcatcgtgctg
ccctgtggagccgggaaatctttggtgggcgtgacagcagcatgcacagtgcgtaagcgc
tgcctggtcttgggtaactcctctgtgtcagtggagcagtggaaggcccagttcaagatg
tggtccaccatcgacgactctcagatctgccgcttcacctccgacgctaaagacaagccc
atcggctgctcagtggccatcagcacctactctatgctgggtcacaccaccaagcgctcc
tgggaggctgagagggtcatggagtggatgcggagccaggagtggggacttattatcctg
gatgaggtgcacactatccctgcaaaaatgtttcgtcgtgttctgaccattgttcaggcc
cactgcaaactggggctcactgccacactggtcagggaagatgacaagattgtggacctc
aacttcctgattgggcctaaactgtatgaggccaactggatggaactgcagaacaatggc
tatattgccaaagtccagtgtgcagaggtgtggtgtccgatgtccccagagttttacaga
gaatatgtggccatcaagacaaagaagcgcatcctgctttatacaatgaaccccaataag
ttccgtgcctgtcagtttctcattcgcttccacgagcggcgtaatgataagatcattgtg
tttgctgacaatgtgtttgccctgaaggaatacgccattcgcctcaacaagccttacatc
tatggtccgacctctcagggggaaagaatgcagattttacagaacttcaaacacaacccc
aagatcaacaccattttcatttccaaggttggagacacttccttcgacttgccagaagca
aatgttctgatccagatctcctcccatggtggatcacgcagacaggaggcccagaggctt
ggcagagtcttacgagccaagaaaggaatggtagcggaggagtacaatgcatacttctat
tcgctggtgtcccaggacacccaggagatggcttactctaccaagaggcaaaggttcctg
gtggaccagggatatagctttaaggtgatcacgaagttggcaggtatggaagaagaggac
ttaatgttctccaccagagatgaccaacagcagctgcttcagaaggtcctcgccgcctca
gatctggatgctgaggaggaagtggtggcaggggaagtcagcgctcgtccacaggtgtca
aggcgaccgggaaccatgagctccatgtccggtgcagatgacaccgtctacatggaatat
cagagccgaagcagcaaagcctccgcagcatccaagagcgtccatccgctgttcaagcgc
ttcagaaagtaa
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integrated database retrieval system
