Amphiprion ocellaris (clown anemonefish): 111565504
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Entry
111565504 CDS
T06018
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
111565504
NCBI-ProteinID:
XP_023121370
Ensembl:
ENSAOCG00000006276
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Position
15:19429525..19508574
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AA seq
1622 aa
AA seq
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MELRLGFRITLVLVILALTLSNERVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANLVESFDVAPDKTRVAVVRYSDRPTTEFNLGRHRTLEDVKRAARNIRYLGGNTMTGDA
ISYTTNNIFTERNGARSNARGIQRVAILLTDGRSQDYVLEPSKAAAKAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKIQPDRFKPNSTSY
GLEEVPGFDLMEYFNVKDILGTRVDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQVFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVEN
LFDRNWHKIALSVEAKAVSLYLDCKHIATLTIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELETCCDLPNGPCPKKVVTEAPPVQIPTPTPTVVEQQRGPQVNCSCPA
GEKGDTGAQGVAGPKGEKGDTGPKGAVGPSGVKGEKGETGKVISVKGDRGDKGDTGSIGL
NGAPGQKGEKGLGGVPGIDGLPGDKGDKGEAGRNGEPGSSGPAGLKGIQGDAGIPGAPGP
KGVTGDAGIKGEKGTPGARGEAGLDGLPGKPGVPGKDGFRGLAGAPGPNGIKGDKGERGL
PGLPGDVVQKEGLRGEKGDAGPPGPQGADGPQGPPGPPGLQGLPGEPGEFGQRGKKGESG
LPGVDGLPGPPGPQGPPGPPGIQGHTGPPGLPGEIGFSGKPGESGKPGLPGKDGLDGLPG
NDGAMGPRGERGTDGFPGKPGPKGDDGPPGPRGPPGERGEAGAPGQRGADGARGDRGVPG
ERGQEGPLGPKGEKGDKGEVGARGPPGAPGNVANVIPEPGEPGKPGEKGEKGDQGKPGEM
GQRGLPGEQGFKGQPGLPGPKGDTGPTGEIGRVGDPGPPGIAGSQGSRGLPGNVGIPGII
GPPGPAGQRGDKGETGKPGQAGPQGPPGEPGVIGPPGPTGKGKDGQNGEQGPQGIQGPPG
PKGQPGSRGEPGLPGDRGSAGEGKVGAPGPPGKNGEPGSAGMRGPPGVAGPQGPAGHNGL
PGRPGEKGSPGEPGKAADLSDLNLKDVCSDCPAGPPGPPGLPGLPGDKGHQGPPGKNGQD
GYQGPAGPAGPQGPPGADGGKGIKGDRGPPGGPGDKGDKGHPGPPGHPGPAGLMGAPGTD
GQPGPVGPPGPPGEKGKEGLKGIQGPPGLPGLIGQPGKMGKDGRPGEIGEPGKQGEPGPP
GNPGLRGLPGFKGHRGEPGALGPKGEDGKSGPPGRDGKPGKEGSKGPPGPEGLIGPRGES
GKPGEPGPSGKPGLPGTPGLRGDKGEAGNPGLPGFSGPKGPAGPPGPIGPEGKQGMPGRL
GDRGTKGDKGDPGTKGDKGHSGDPGMPGNPGPPGRKGHTGMMGMSGPPGEIGAPGPQGPS
GNPGLPGPRGESVSLEQMRRLIQEELAKQLDAKLAYLMAQIQPAHVKSTAGRPGPPGPPG
KDGSTGRPGPPGEPGMPGQNGGEGPRGPMGPKGEKGAKGEKGDTGVGDRGEQGPPGPIGP
AGMPGYGKDGSPGAAGAQGEAGNPGPHGQPGPPGPPGQCDPSQCAYYASLAQRPHSKNMK
GT
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggaattgcgactgggatttaggatcaccctggtcttggtcatcctggccttgactctt
tctaatgagagagtggaagctcaaagggcagggtgtaaaaatgttcactatgacttggca
tttatcctggacacctcatccagtgtggggaaagagaactttgagaagattagacaatgg
gtggccaacctggtggagtcttttgatgtggcacctgacaagacaagagtagccgtggtt
cgttacagcgacagacccaccactgagttcaatctgggccgacacaggaccctggaagat
gtgaagcgagccgcccgtaacatacgctacctgggggggaatacaatgactggggatgct
atcagctacaccaccaacaacatcttcacagagcggaacggagcgaggtcgaacgccaga
ggcattcagagggtggccatccttctcacagatggccgaagccaggattatgttctggag
ccctctaaggcagctgccaaagctggcatcaggatgtttgccgtgggcattggggaagct
ctgaaggaggagctggaggagatcgcagctgagccaaagaatgcacacgtcttccatgtg
acggactttaatgccattgacaagatcaggggcaggctcaggaggaggctgtgtgagaat
gtcctgtgtccaaacatgaagatccaacctgatcgctttaagcccaacagcaccagttat
ggtcttgaagaggttccagggttcgacctgatggagtactttaatgtgaaagatattctg
ggaaccagagttgatgaaggccaaagttcatacgttcgccttggcaccatgcctattgtg
cagcaaacagaagatgtgtttcctcaagggctgccagatgaatatgcctttgttacaaca
ttcaagttcaggaaaacctcaagacgtgaagattggtacctctggcaggttttcgacaaa
tatgggatcccacaggtgtccatccgtctggacggagagaacaaagcggtagagtacaac
gctgtcggcctgacaaaagatgctgtcagagctgtgtttaagaaccctgaagttgaaaac
ctgtttgaccgcaactggcacaagattgcgctcagcgtggaggccaaggctgtgtctttg
tacctggactgcaaacacatcgccaccctcaccattgaagacagggaggacattgatatc
caggggaagacagtgattggcaagaggctctatgacagtgtgccaattgattttgacctc
cagaggatgatgatttactgtgattccaagcatgcagagctggaaacctgctgtgatctg
cccaatgggccttgccccaagaaagttgtgaccgaggctccacctgtgcagatccccacc
ccaacacccaccgttgtggagcaacaaagaggccctcaagtgaactgctcctgtcctgca
ggagagaagggagacactggtgcacagggtgttgcaggtcctaagggtgaaaagggtgac
actggccctaagggtgccgttggaccatctggcgtcaaaggagaaaaaggagaaactggc
aaagtaatttctgtcaaaggtgacagaggtgacaagggtgatacaggcagtatagggttg
aatggtgctcctgggcaaaaaggagagaagggacttggtggtgtgccaggtattgatggc
ttacccggtgacaaaggggacaaaggtgaagcaggacggaatggcgagccagggtcgtca
ggtccagctggattaaagggaattcaaggagatgcaggaatccctggtgcacctggacca
aaaggtgtcactggtgatgcgggcataaaaggagaaaaaggaaccccaggagccaggggt
gaggcaggtttggatggattacctggaaaacctggtgttcctgggaaagatggtttcaga
ggactggctggagcacctgggcccaatggaatcaaaggtgacaagggggagagaggcctt
cccggattacctggggatgtggtacaaaaagaaggcttacgaggtgaaaagggagatgct
ggacctcctgggcctcaaggggctgatggcccccaagggcctcctggtcctcctggtctt
caggggctgcctggtgaacctggagagtttggccagaggggaaagaaaggtgaaagtgga
ctgcctggagtggacggcctgcctggacctccaggtcctcaggggcctcctgggccaccg
ggaatccaaggacacactggacctcctggtcttcctggtgaaattggattttcaggcaaa
cctggagagtctggaaagccaggtcttcccggtaaagatggtctggacggtcttcctgga
aatgacggtgccatgggccccaggggagagcgtggaacagatggttttccaggcaagcct
ggacctaagggtgacgatgggcctcctggaccaagaggacctccaggagagagaggagaa
gctggggcccctggacaacgtggtgctgatggagccagaggagacagaggtgttccggga
gaaagaggacaggaggggccactggggccaaaaggtgaaaagggtgacaagggtgaagtg
ggagctaggggaccgcctggcgctccaggaaatgtggcaaatgtcatccctgagcctgga
gaacctggaaagcctggagagaaaggagagaagggggatcaaggaaaacctggagagatg
ggtcaaagagggttacctggtgaacaaggttttaaaggacaacctggactaccgggtcct
aagggggacaccggtcctacaggagagataggacgtgttggagaccctggtccacctggc
atagctggctctcagggttcccgtgggctaccaggaaatgtgggcataccggggatcatc
gggcctcctggtccagctggacagagaggagacaagggcgaaacaggcaaaccaggacaa
gcaggtccccaaggtccacctggagagcctggcgtgattggaccacctgggccaacaggg
aaagggaaagatgggcaaaatggagaacaaggaccacagggaattcaaggacccccagga
ccaaagggccaaccggggtcacgtggagaaccggggttaccaggggacaggggttctgca
ggagaaggcaaagtgggagcaccgggccccccaggaaagaatggggaacctggatcagcg
ggtatgaggggtcccccaggagtcgctggacctcaaggcccagcaggacataatggtcta
ccaggaaggccaggagagaagggatcacccggagagcctggaaaggcagctgacctttct
gacctaaacctgaaggacgtttgctcagactgtcctgcaggtccacctggacctcccgga
ctcccaggactcccaggagataaaggacaccagggaccccctgggaaaaatggccaagat
ggataccaaggcccagcgggaccagcaggacctcaagggccccctggagctgacggcgga
aagggtataaaaggtgatcgaggacctcctggaggcccaggagacaaaggagacaagggt
cacccaggtcccccaggccatccaggtcctgctggattaatgggtgcacctggtaccgat
ggacagcctggacccgtgggtcccccagggccccctggagaaaagggcaaagaaggtctc
aaaggaatccagggaccaccaggtcttcctggcttgatcggtcagcctggaaaaatggga
aaagatggcagaccaggtgaaataggagaacctggcaagcaaggtgagcccggacctcca
ggaaacccaggactaaggggcctccctggctttaaaggccacagaggagaacctggagct
ctaggacctaagggagaagatggaaagtctggaccccctggacgtgacggcaagcctggg
aaggagggctctaagggacctccaggcccagagggacttattggtccaagaggagagtcg
ggcaagccaggtgaaccaggaccatcaggaaaaccaggtcttcctggaacaccaggtctt
agaggcgacaagggagaagctggcaaccccggattaccaggctttagtgggcctaaaggc
ccggcgggtccacctggtccaattggcccagaagggaaacagggaatgccaggcagactt
ggtgatcgtggaaccaaaggagataagggagacccaggtacaaagggagacaaaggacat
tcaggagatccaggtatgcccggaaatcccggccccccaggtagaaaaggccacacgggg
atgatgggcatgtcgggaccaccaggagaaataggagccccagggccgcaaggaccttca
ggaaaccccggtctcccgggccccaggggagagtcagtgtcactggagcagatgagacgg
ctcatccaggaggagctggcaaaacaattagatgccaaactagcttacctcatggctcag
atccagccagctcacgtgaagagtacagcaggccgcccgggacccccaggccctcctggt
aaggatggcagcactggacgtccaggtccccctggagaacctggtatgcctggacagaac
ggaggagaaggacccaggggacccatgggcccgaagggcgaaaaaggagcaaaaggagaa
aaaggagacactggtgttggtgacagaggagagcaaggcccacctggccccataggccca
gccggtatgcctggttacggcaaagacggaagtccaggagcagcgggagcccaaggagag
gcaggaaatcccggcccccacggtcagcctggacctcccggtcctcccggccagtgcgac
ccctcccagtgtgcctactacgccagcctggcacaaagaccccacagcaaaaatatgaag
ggcacttaa
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