Amphiprion ocellaris (clown anemonefish): 111565927
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Entry
111565927 CDS
T06018
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111565927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111565927
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111565927
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111565927
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111565927
U7-dependent histone pre-mRNA processing factors
111565927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
111565927
NCBI-ProteinID:
XP_023122009
Ensembl:
ENSAOCG00000010077
LinkDB
All DBs
Position
20:14292048..14299966
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKVDMIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCIQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQTQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKNTLKIFKNITLIHEAGMVLLEWIANPLNDMYADAVTTVVLEVQSNPKA
QKVMETQSAIMDMDVFQTRLEVMLQDMFGGECVDFSDGKNICVTVDGKTVHICLETRLVS
YEDECTEDDSLREMVELAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgaaaagtagacatgattgtccccgccgaggaaagcgaccagctgcta
attcgtccactgggtgctggtcaggaggttgggcggtcatgtattatcctggagttcaaa
ggaaggaaaattatgctggactgtggcattcaccctggcttggagggaatggatgctctc
ccttacatagacttgatcgacccagctgagatagacctgctgctcatcagccatttccac
ctggatcactgcggagctctgccttggttcctccagaagaccagctttaaagggaggaca
ttcatgacccacgccactaaggccatttaccgctggctgctatcagattacgtcaaagtc
agcaacatctctgcagacgacatgttgtacactgagactgacctggaggagagcatggac
aagattgagaccatcaacttccacgaggtcaaggaagtggctgggatcaaattttggtgc
taccacgctggtcatgtgctgggagctgccatgttcatgatcgaaatagctggagtgaaa
ctgctgtacacaggagacttctcccgacaagaagacagacatctcatggctgctgagatc
cccagtgtcaaacctgacatcttaatcatagagtcaacctatggtactcatatccatgaa
aagagggaggagcgtgaagctcggttctgtaatacagtccatgacattgtcaacagagag
ggccgctgtttaatccctgtgttcgctttgggacgggcccaggaactgttgcttatttta
gatgagtactggcagaaccacccagagctccatgacatccccatttattatgcttcatcc
ctggccaagaagtgcatggctgtgtaccagacttatgtcaacgcaatgaatgacaagatc
cgcaaggccataaacatcaacaatccttttgtcttcaaacacatcagcaacctaaagagc
atggatcactttgatgacatcggccccagtgtggtgatggcgtctccaggtatgatgcag
agcggcttgtccagagagctctttgagagctggtgcactgataagaggaatggagttatc
atcgctggatactgtgtggaggggacactggccaagcacatcatgtctgagcctgaggag
atcaccaccatgtccggacagaagctgcagctgaagatgtcggtggactacatctccttt
tctgctcacactgactaccagcagaccagcgagttcatcagggctctcaaaccaccgcat
gtgatcttggtacacggggagcagaatgagatggcccgtctgaaggctgcgctgatcagg
gaatatgaggataatgatcaggttcatatcgaagtccacaaccctcgcaacacagaggct
gtcacactgaacttcagaggagagaaactggccaaggtgatgggctcactggctgataag
aaatgcattcagggtcagagagtgtcaggaatactagtgaagaagaacttcaactaccac
attctcaacccctctgacctgtccacctacacagagctggccatgagcacagtgaaacag
acccaggccatccccttcactggaccttactcgctactcgtctgccatctgaggaacctc
actggtgatgtggaagagctggatggaaccgagaagaacactttaaagatctttaaaaac
atcactctgatccatgaggctggcatggtgctgctggagtggatagctaaccctctcaat
gacatgtatgccgatgctgtcaccactgtggtactggaagtccagtcaaacccaaaggct
caaaaagtcatggagactcagagcgccattatggacatggatgtcttccaaacccggcta
gaagtcatgttgcaggacatgtttggaggagaatgtgtggacttcagtgatggtaaaaac
atctgtgtgacagtagatgggaagacagttcacatttgcttggaaacaaggttggtgtcc
tacgaggatgaatgcacagaggatgactcgctgagagagatggtagaactggcggtgcag
cggctctatgatgccctgaacccagttatctga
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