Amphiprion ocellaris (clown anemonefish): 111566265
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Entry
111566265 CDS
T06018
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03440
Homologous recombination
aoce03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111566265 (palb2)
03460 Fanconi anemia pathway
111566265 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111566265 (palb2)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
111566265 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
111566265 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
111566265
NCBI-ProteinID:
XP_023122552
Ensembl:
ENSAOCG00000027975
LinkDB
All DBs
Position
4:complement(36908261..36917849)
Genome browser
AA seq
1426 aa
AA seq
DB search
MDTKVGDLLQCDDQLRTTLHCDDKEKLRRKLAQLQREYLRTAQRLQRAERLEAVRKHVRS
RITQQNQQDQKGPQVSSNPRLNPPALVLNNSNATDTGISQSQGHTEDSDNPRRSQVIRFL
LPSDAACPQTPDPCHDTLRGHRPSPALRLRSRRSRLRWEKRSADAGRSTGYSEKHQEQRE
GIESAGTAEEGDKVKSEQANAANEIEDLFSSTESDSPSRLLTHWNTHGYTEAGDMEGMEI
QGHEEQRQKETELKTEEIQESRSSDLLLTCCNPASATEQRGQDGTQNGGRKERVQDGEHI
REQREKSLCDENSNKDIQQNATENVDSENKHNSVEVKEEKNGITGDGKGVSLLGSCTLVE
GLLFPVEYYVRTTRRMSLSQSQPDMQAVIVSQLNVGRKRRSQGRGRGLSRSTHTTERSDQ
HIQTDCSSVTAAPTSVDPLKPSHVQLSSASAVHSQGCSKILDHTNPEACFSSTVTTACPA
RDRRRKRGRGRGRPQTPRSAVGLNTYQLSCFQTSGDPQPTSTLVSSSESLHGADGPKPCL
TPETVSVSDESQPVSILSTSTQSCPAVNEAPSYCASEHLKKNYPIFLKNTVKADMAPQIT
RGTSSWPSLLLPPSPPAQASLFPLPSPSAATLVNSLIKMDIPQDFHLPDEHFASLKLHKL
RQIAMESGLEHLSSSSYNMQNSNCQSDPRCSSSDAVTHLLLPLSLTPKITTAPRPNEELQ
AATASIDLSISSIEHKLKDKLINPSLSGEPSDRDITETHVGQLTENLHDETHSSPTETTS
LCADDCVDKCKRNEAEVLNSCSQSILSVSNTHRSVKYTDKPQPHFHCADRLVGKESDNVT
ELSGSIQQPASEKQMRYSGADQPLEDLRSDNPQTRNRAVTETITFACPLQEAPEEPPNSS
TALHTCNDTKDAQDSPVKHPKVKSPTAHSKEPSEPSVNLSTNKLIGNKTPYVMHHSVHSQ
LLLTSPPASAADPFITPRLPSSTLTSSPTLPSVGLTPHPVTGSLPLTSSPSAPSLTLPPP
HSPSTQALSPPALSPCPSISSLPPSQPEPATCTTPSSLQLQESCGQAGLTTEEKAEERMM
RCTLTLKAAAGGSLVDACCLPGSSGRLCVAAAGKWAVCLWSQTSASDWSLVHTWTFNEPV
ISVFAVPDAARLMCVTLGQLEIREVRMLSCSSLVQTLFCEGVVQAAVGVSKSRVVTSSHS
ATGSTLQVFTLSDNSSSPSSLPLASPGVCVGALAPVDGVSDSLIGTDEGGHLFVWNLKTG
QLLCRIPLGDGLSHTACLRGYSYCGVLFVLLQHQFLSSLEEEKKDAKIKDGVLWDKEMKT
SLFSLVAINPLSGKSVLATQLYPPEAWSGRLCEADVSRSSVVGLSQNGCVCVWELGGRWG
SQMVSDPESEGWQLARWGGEDMLVTGHHNGDVTLHCCSTNHTQLCL
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggacactaaagtgggagatttactgcagtgtgatgaccagctgaggacaacgctgcac
tgtgatgacaaggagaagcttcgcaggaagttggcccagttacaaagggaatatctcagg
acagcccagagactacagcgtgctgagcgcttggaggcagtgcggaaacatgtgaggagc
aggatcactcaacagaaccaacaagaccagaaaggtccacaggtttcatctaatccccgt
ctcaacccacctgcattggtcctgaacaacagtaatgcaacagacacgggcatatcccag
agccagggacacactgaagattctgataaccctaggaggagccaagtgatcagattcctg
ctcccctctgatgctgcttgtccacaaacaccagatccttgccatgatacattaagaggt
cacagacccagtccagccctccgcctcaggtcacggcgaagccgcttacgctgggaaaag
aggagtgctgacgctggcaggagtacaggctacagcgaaaaacatcaggagcagagggaa
gggattgaaagtgctggaacagcagaagaaggggataaagtcaagtcagaacaagcaaat
gctgcaaatgaaattgaagacttattttctagtacagaatcggattctccctctcggctg
cttacacactggaacacacatggttacactgaagcaggagatatggagggaatggagatc
caaggacatgaagaacaaaggcaaaaagagactgagttgaaaactgaagagatacaagag
tcacggtcatctgacttgttgctcacatgttgcaaccctgcttcagccacagaacaaagg
ggacaagatggcacacaaaatggaggaaggaaagagagagtgcaggatggtgaacatatt
agagaacagcgagaaaaaagtctgtgtgatgagaacagtaataaagacattcaacaaaat
gcaactgagaatgtagacagtgaaaacaaacataatagtgtggaagtaaaagaggaaaag
aacgggatcacaggagatggaaaaggtgtgagccttctaggctcctgtaccttagtggaa
ggactgctttttccagtggagtactacgttcgaaccacaaggcgtatgtcgctttcacag
agccagcccgacatgcaggctgtcatagtgtcccagctgaacgtgggacgaaaacgcaga
agccagggccgcggcagaggactcagtaggagcacacacaccactgaacgttcagatcag
cacatccagacagattgctcctctgtgacggctgcacctacatctgtagatcctctgaag
ccatcacatgtgcaactttccagtgcatctgctgtccacagtcagggctgcagcaagatt
ttagatcacaccaacccagaagcttgtttttcttccacggtcaccactgcttgtccagcc
agggacaggaggaggaagagaggtagaggcagaggaagacctcagaccccacggtcagct
gttggattaaacacctatcagctaagctgttttcaaacctcaggtgatcctcaacccacc
agcaccctggtctcctcctctgagtctcttcatggagctgatggaccaaagccctgcctc
accccagagactgtttcagtttcggatgaatcccaacctgtgtccatcctcagcacttct
acgcagtcttgtcctgcagttaatgaagctccatcctactgtgcctcggaacatctgaag
aagaactatcccatctttctgaagaacactgtcaaggctgacatggccccacagataacc
agaggcacatcaagctggccatctctccttttgcctccgtctccaccggctcaagcatct
ctttttcctctgccgtctccgtccgctgccaccctggtcaacagcctaataaaaatggat
atacctcaagattttcatctcccagatgagcattttgcctcccttaagctgcacaagctt
cgccaaatcgccatggagtcgggacttgaacatttgtcatcttcatcttacaacatgcaa
aacagcaactgccagtctgaccctcgatgcagcagcagtgacgcagtgacgcatcttcta
ctcccactcagcctcacgcccaaaatcacaactgcaccccgtccgaatgaagaactccag
gctgctacagcgtctatagacctctcaatttcatcaatagaacacaagcttaaagataaa
ttgataaacccgtccttaagtggagagccatctgaccgagacattacagaaacccatgta
gggcagctgactgaaaacctccacgatgagactcactccagcccaacagaaactacatca
ctgtgtgctgatgactgtgtagataaatgtaaaaggaatgaagctgaggtactgaacagc
tgtagccagagtatcctatcagtgagcaacacacacagatctgtaaaatataccgacaaa
ccacagcctcatttccactgtgcagacagactcgtaggcaaagagagtgataatgtgact
gaattatcagggagtatacagcagcctgcatcagaaaaacaaatgaggtatagtggtgca
gaccagcctttagaggatctgagatctgacaacccccaaacaagaaacagagctgtcact
gagactattacttttgcttgccctctacaggaagcgcctgaggaacctcctaacagctcc
actgctttacatacatgtaatgacacaaaagatgcacaggactctcctgtgaagcatccg
aaggtgaaatctcctactgcacattcaaaagaaccttcagaacccagcgtgaatctttcc
acaaacaaactaattggaaataagaccccatatgtaatgcaccacagtgtccactctcag
ctcctgttgacttctcctccggcttcagcggccgaccccttcataaccccacgcctgccc
tcgtccactctaacctccagccccacactgccctcagtaggactcacacctcaccctgtc
accggcagcctccccctcacctcctctccctctgccccttctctcaccctgcctccccct
cacagtccgtccacacaggcgctctctcctccagctctctctccatgtccgtccatctcc
tccctccctcccagccagcctgaacctgctacctgcacaactccctcaagccttcagctg
caggagtcatgtgggcaggcaggtctgacaacagaggaaaaagcagaggaacgcatgatg
agatgcacactcacactgaaggctgcagcaggaggcagtctggttgatgcatgttgtctt
cctggatcctcgggccgtttgtgtgtagcagccgcaggaaagtgggctgtgtgtctttgg
agtcagacttcagcgtctgactggagcttagtacatacatggaccttcaatgagccagtg
atcagcgtgtttgctgtcccggatgctgctaggctgatgtgtgtgactctgggtcagttg
gaaatcagagaagtcaggatgctgtcctgctccagcctcgtacaaacactgttctgtgag
ggtgtcgtccaggcagctgtgggagtgtccaagtccagagtggtcacctcctcccactca
gcgacaggttccactctgcaggtgtttacgctgtcagacaacagcagctcaccaagctct
ctgcctcttgcgtctcctggagtttgtgttggagccctcgctccagtggacggagtttct
gattccctcatcggcacagacgaaggtggacacctctttgtttggaatttaaaaactgga
cagctgctgtgtagaatccctctcggagatggtttatcacacacagcctgtctcagagga
tactcctactgtggagtgctgtttgtcctgctccaacatcagtttttaagctcactggaa
gaagaaaaaaaagacgcgaagataaaagatggggtgctttgggataaggagatgaagact
tccttgttctctttggtcgccattaaccctttgagtggaaagtccgtcctggctactcag
ctgtatccaccagaagcctggtctggcaggttgtgtgaagccgacgtgagccgctccagc
gtggtgggcctgagtcagaacggctgtgtgtgtgtttgggagctgggtggtcggtggggt
tcacagatggtgtcggatcctgagagtgaaggctggcagttggctcgatggggaggggaa
gacatgctggtgactggacatcacaacggagacgtgactttacactgctgcagtacaaac
cacactcaactctgcctctaa
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integrated database retrieval system
