Amphiprion ocellaris (clown anemonefish): 111566596
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Entry
111566596 CDS
T06018
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111566596 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111566596 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111566596 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111566596 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111566596 (col4a2)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111566596 (col4a2)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111566596 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111566596
NCBI-ProteinID:
XP_023123045
Ensembl:
ENSAOCG00000033256
LinkDB
All DBs
Position
11:complement(5782354..5859480)
Genome browser
AA seq
1679 aa
AA seq
DB search
MIGTMQGQHSRGQKSLRLLLLCLFAAILVSGVQAGGKKHSGPCGGRDCSGGCKCFPEKGA
RGHPGPLGPQGPQGPPGRAGDPGIQGPKGQKGDSGHGGIIGPKGNVGMTGVPGFSGSDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSPGTPGYNGSPGFPGPPGRKGEKGEDLQLSVYMM
RFRGDPGAPGFDGIFGPQGNPGWPGTRGIQGPKGPPGPPGPPGPKGTMTKVFKGVKGERG
ETGPPGPQGNSTHPHTRPPSGHHPPGPPGEKGLKGERGDQADNRGETGVMGFPGPRGASG
ADGRPGPRGDPGETGPKGTVGLKGVRGEAGELSSSGSLWPWSSVAGPPGPPGEQGPQGER
GPIGDQGLPGPPGRPADESQQQVWDFFGPFGFKGDQGEKGPQGEPGYPAVTVGPAGMDGR
PGERGRPGPKGTWEEYFKGAPGGRGRPGNAGFKGMKGDHGECECTTVNSPRGLPGPAGDP
GDAGMTGEFGQEGDSGDPGRPGEDGLPGPAGIIGVPGPRGRKGDRSVATQKGSPGDPGDS
GLDGVGGAPGAPGQSGLPGRLGNRGPSGEGPFGERGDKGFPGFPGRPGAAGLRGEPGTDL
GGFKGQQGLPGDDGTPGFHGLPGTPGTPGGCSPRGDGGQVDTTGLCEGIPGPPGLPGLKG
PDGFPGFPGLSGEKGAPGLVGIKGEKGEQGDRGTGGPPGPPGFIGPRGDLGVPGSKGSVG
VPGLPGMPGRYGAQGELGAPGEVLGASSGPPGDPGLPGRQGDKGYTGDQGNPGYPGMVGM
PGMIGFKGESGPIGLQGEEGRPGPAGKYGFPGDPGRAGPPGLHGATGQPGLTGERGTEGD
LGPPGPIGLKGIPGSFGDDGAVGEYGPPGDPGRTGAGGRPGVPGMKGYKGSSGMAGFKGV
RGNLGVQGFSGVKGETGVPGQVGPKGVTGQSGEKGDRGLRGKPGKKPDIPAQMIVDMKGT
KGDQGHEGSQGFTGPRGTKGFPGVPGLEGSHGLPGGPSHIKGYHGDPGAQGLPGIKGMPG
ITGNRGITGFEGMHGTKGTKGSPGAYGASGEKGRKGIKGDRGLQIDLPGSPGSRGEHGLP
GEPGQKGLFGSTGDRGIPGFDGIEGKRGESGDPGIVGFPGLDGQNGLPGNQGQKGFPGAP
GREGHPGFPGFSGTKGYPGLKGLYGLDGLKGQKGVPGTPGLDNFGPDGEPGVKGQKGDTG
DPNNQPGVPGTAGLKGFQGPLGDHGHPGPPGFRGPRGPDGTPDKPGSSGDIGFPGPTGYQ
GFPGARGYPGVDALPGEKGVAGITGFPGFPGTKGFKGDQGSFGYKGPDGVSGKKGIKGEQ
GLMGVPGVIGIKGERGPAGLKGTTGLPGVRGFPGRQGPPPTPEKIPGERGPSGPQGIQGP
KGVRGETGPQGPPGDAGFMGPIGQKGMPGISGTPGTPGFRGEFGQMGHPGLQGMDGRRGN
PGIPGLPGMPGRSVSVGYLLVKHSQSDHTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLG
LAGSCLPRFSTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGDIKPYISRCSV
CEAPSVAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTSAGNEGGGQSLSSPGSCLEDFRT
TPFIECNGAKGTCHYFANKYSFWLTSLEQSYQPDPSSETLKAGQLLSRISRCQVCMKNL
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgattggcaccatgcaaggacaacacagcagaggacagaagagtctgaggctgctgctt
ctgtgcctcttcgctgccatcctcgtgtctggagtgcaagcaggtgggaagaagcacagt
ggcccctgtggaggaagagactgtagcggaggctgtaaatgtttcccagagaagggcgcc
agggggcatcctgggcctctcggtcctcagggcccacaggggcctccagggagagcaggg
gacccaggcatccaggggccaaaggggcagaaaggtgatagtggtcacggtggcattata
ggtccgaaaggaaatgtgggaatgactggtgtccctggattctctggaagtgatggtatt
cctggccacccaggacaagctggacccagagggaagcccggggctgacggctgcaacggg
actcatggagactcaggatcaccaggaacacccggatataacggctcgcctggttttcct
ggaccaccaggcaggaagggtgagaagggagaagatctgcagctcagtgtgtacatgatg
cgtttcaggggagatccaggcgcaccaggttttgacggaatatttgggcctcaaggaaac
ccaggatggccaggtaccagaggtatacaaggacctaagggtcctccagggcctccaggt
cccccaggaccaaagggcaccatgaccaaagtgttcaagggagtcaaaggagaacgagga
gagacgggacctccggggccacaaggaaactctactcatcctcacactaggcccccctct
ggacatcatccaccaggacctcctggagaaaagggtctgaaaggagaaagaggagatcag
gcagacaacagaggagaaacaggagtgatgggattccctggacctcggggagcatctggt
gcagatggaagacctggaccaaggggggatcctggtgaaacaggaccaaaaggcacagtt
ggacttaagggagtcagaggtgaagcaggagagctgagttcatccggatccctctggccc
tggtcctcagttgctggtcccccgggtccccctggtgagcagggtccgcaaggagagagg
ggtccaataggagaccaaggcttacccggaccaccgggacgtcccgccgatgaatcacag
caacaagtgtgggatttttttggaccatttggattcaagggagaccaaggagagaagggt
ccacaaggggagccaggataccctgctgtcactgtaggacccgcaggaatggatggacgc
ccaggagaaagaggccgtcctggacccaaaggaacatgggaagagtacttcaaaggggct
ccgggagggagaggaaggcccgggaacgcaggattcaaaggaatgaaaggcgatcacgga
gaatgtgaatgcaccactgtgaactcccctcgtggtttacccggccctgctggtgatccc
ggtgatgctgggatgaccggagagtttggtcaggagggtgattcaggagacccgggtcgc
ccaggagaagacgggctccctggacctgctgggatcattggtgttccaggaccaagaggc
cgaaaaggggacagaagtgttgccacgcagaaaggatcacccggtgacccaggggattcc
ggattagatggtgttggaggagcacctggtgctccgggccaaagtggtctacctggtcgc
cttggcaaccggggtccttcaggtgaagggccctttggagaacgtggagacaaaggtttc
ccaggctttccaggtcgacccggtgcagctgggctgaggggagaaccaggtacagatctt
ggtggctttaaaggtcagcagggtttacccggtgatgacggcacccccggctttcacggc
cttccagggacacccggcactccaggcggctgtagtccgagaggagatggaggacaggtg
gatacaacaggactttgtgagggtattccaggacctcctgggctgcctggacttaaaggt
cccgatggattcccaggtttcccaggtctttctggtgaaaaaggagcacctggtttagtc
ggaataaagggagagaaaggagaacaaggagatcgaggaacaggtggccctcctggacca
ccaggttttatagggccccgtggagacttgggggttcctggtagcaaaggttcagtggga
gtccctggtttgcccggtatgcctggtcgctatggagcacagggtgagctgggtgctcca
ggtgaagtcttgggagcatcatccggaccgcccggtgatccagggctgcctgggcgtcaa
ggagataaaggctatactggggatcagggcaatccaggctatccaggaatggtcggcatg
cctggtatgatcggcttcaagggtgagagtggccctataggcctgcagggggaggaagga
agacctgggccagcgggcaaatatggcttccctggagatcctgggagagcaggtccacca
gggctgcatggtgcaacaggacagccaggtctcactggagagaggggaactgaaggagac
ctgggtcctccaggtccaataggattaaaaggtatcccaggttcattcggtgatgatggt
gccgttggagagtacggcccacctggggacccaggacggacaggtgcaggcggacgccca
ggagttccgggaatgaaaggatacaaagggtccagtggcatggcaggttttaagggagtc
agaggtaatcttggagttcagggcttcagcggtgtgaaaggagaaactggagtgccagga
caagttggaccaaaaggagtgaccggccagagtggagaaaaaggtgatcgcggtctgagg
gggaaacctgggaagaaacctgacattcctgctcagatgattgttgacatgaagggaacc
aagggagaccagggccatgaaggaagtcaaggttttactgggccaagaggtactaagggt
ttccctggtgtgccaggccttgagggaagtcacggtcttcctggaggccccagtcatatc
aaaggttaccatggagacccaggagcacaggggctaccgggaatcaaaggaatgccagga
ataactggaaatcgaggaattactggttttgagggaatgcatggcaccaagggaaccaaa
ggaagtcctggtgcttatggcgcatcaggggaaaaaggaaggaagggaatcaaaggtgac
aggggccttcaaatagaccttccaggatctcctggatcgagaggagaacatggattacca
ggagaaccaggccagaaaggattatttggatccactggtgacaggggtatacctggtttt
gatggtatcgaaggcaaaaggggagaatccggtgatccgggaatagtgggattcccaggc
ttagatgggcagaacggacttcctggaaaccaaggtcaaaaaggctttcctggggctcct
ggaagagaaggacatcctggcttccctggtttctctggaaccaaaggttaccctggtctg
aagggcctctatggactagatggactcaaaggacagaaaggtgtccctggaacaccaggt
ctggacaactttggaccagatggagagccgggagttaaaggacagaagggagacactggt
gatcccaacaaccagcctggtgttccaggcacagcgggtttgaaaggcttccagggacct
ttaggagatcacggtcaccctggaccaccaggattccgtggccccagaggaccagatggg
accccagacaaaccaggatccagtggagacatcggctttcctgggcctacaggataccaa
ggtttccctggagccagaggatatcctggtgtggatgctctcccaggagaaaaaggtgta
gcaggaataactgggtttcctggattccctggtacgaaaggattcaaaggagatcaaggt
tcatttggatacaaggggccagacggtgtttctgggaagaaaggaataaaaggagagcaa
ggactaatgggagttcctggcgttattggcataaagggagaaagaggaccagctggcctg
aaaggaaccacaggactcccaggtgttcgtgggtttccgggcaggcagggtcctcctcca
acccccgaaaaaattccaggagagaggggtccttctgggccgcagggcatccaaggacca
aagggtgttagaggggaaacaggaccacaaggcccccctggagatgcaggcttcatggga
cctattgggcagaaaggcatgcctgggattagcggtacaccaggaacgcctggattccgt
ggagagtttggacaaatgggccaccctggtctgcaaggcatggacggtcgccgtggcaac
cctggtatccctgggttacctggtatgcctggccgcagcgtcagcgtgggatacttgctg
gtgaaacacagtcagtcagaccatacgcccatgtgtccagtgggtatgtccaaactgtgg
gacggctacagtctgctgtacctggagggtcaagaaaaggcccacaaccaggatcttggt
ctggctggttcctgcctgcctcggttcagcaccatgcctttcctgtactgcaaccctgga
gacatctgttactacgccagcagaaacgataagtcctactggctgtcaaccactgctcct
cttcccatgatgcccgtagaagagggagatatcaaaccgtacatcagccgctgctcagtg
tgtgaagctccatcggtcgccatcgcagtccacagtcaggacatcaccatcccacagtgt
ccggtgggctggcgcagcctgtggatcggctactccttcctcatgcatacttcggcagga
aacgaaggcggcggtcagtccttgtcgtcgcccggctcctgcttggaggacttccgcaca
acgccattcatcgagtgtaacggggccaaaggcacatgccactactttgccaacaagtac
agcttctggctcacctcgctagagcagtcgtaccagcctgacccttcatcagagacgctc
aaagcaggccagctcctgtcacgcatcagccgctgccaggtgtgcatgaagaacttgtga
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integrated database retrieval system
