Amphiprion ocellaris (clown anemonefish): 111566597
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Entry
111566597 CDS
T06018
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04382
Cornified envelope formation
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04518
Integrin signaling
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111566597 (col4a1)
04518 Integrin signaling
111566597 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111566597 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111566597 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111566597 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111566597 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111566597 (col4a1)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111566597 (col4a1)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111566597 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111566597
NCBI-ProteinID:
XP_023123048
Ensembl:
ENSAOCG00000000549
UniProt:
A0AAQ5Y9E0
LinkDB
All DBs
Position
11:5859528..5905444
Genome browser
AA seq
1641 aa
AA seq
DB search
MLLPSGTLLLLLAALYSTVDMTGAEGCGASCGKCDCSGVKGAKGERGFPGLQGNMGFPGM
QGHEGPPGPMGPKGDLGEPGAPGLKGVRGPPGLPGFPGNPGLPGINGNDGPPGLPGIPGC
NGTKGDRGRDGAPGFPGLQGPPGIAGVPGMKGDPGGVMGIAPLKGERGYPGQPGRPGTPG
PPGPIGPPGPRGYQGLKGDAGPPGPPGEKGDRLAFVSEKGDKGDRGFQGPPGPPGGSPGE
VEGHTTIYVPGSPGVRGLPGDKGDKGFCVPYLDGMKGEPGPPGQRGKSGKDGEDGPKGEK
GFSGAPGLPGSQGEKGERGPPGHGEGPPGPPGSRGLPGLQGEKGFTGPRGEAGPPGRHIE
GPRGEQGQKGDVGEKGDRGIEGESLVGPPGQPGLTGPPGPPGEPIDANECDIQKGAPGPP
GPPGLQGEVGQKGDKGDTCVQCEGSGPPGLPGDQGPKGDRGPPGAVGGKGEKGVPGLPGQ
PGRPGSQGTPGLMGAPGAVGEPGDIYVAPGLKGDKGLPGQSGLPGKPGVDGLPGRDGLPG
QPGLKGEPAKEGIKGERGPDGNPGLIGPPGERGPPGVPGFGRPGEPGEKGSQGRPGIPGA
NGIPGAKGEPGVAVSSPGPQGAPGPRGETGITGIQGDRGLPGAPGLPGFPGDKGEHGPPG
IGFPGPSGPKGISGIPGAPGLPGEPGRPGQDGLTGKPGVPGQKGEPGIGRPGPKGSQGPQ
GITGFQGDKGGMGMPGIPGQEGQTGPPGPQGIKGEIGPPGPPGQVGAPGAPGKGSPGAPG
PQGPPGEPGPFGREGVKGEKGYPGAPGLDMPGPQGEKGTPGFPGIPGSKGLPGPPGLPGR
DGYIGNQGPKGEMGFIGTPGVPGIPGPPGTPGSPGLRGDPGITGPRGDIGEPGLKGERGE
PGIAGPPGNMTKIEMENMKGQKGESGDTGIPGVSGEKGHQGLQGDPGMPGKDGEPGLPGQ
PGEKGDSGVPGEPGSMGQPGQKGNVGEMGIPGPVGPKGTKGDFGTPGHPGFRGTDGEKGD
RGIPGEPGIGLPGRPGEKGQTGQAGFPGIPGEKGQKGHEGMPGKPGLQGSKGDQGAVGYP
GQAGRPGEKGTPGLPGSAGEPGREGRPGEGGMQGPPGPRGDKGEPGVDGIPGSSGERGDP
GIPGHGLPGSPGALGSKGDKGSPGFPGAPGHAGVPGIKGDKGLPGPQGPQGEPGEQGHPG
ISLEGPKGERGETGQPGEGGSPGAPGPSGLPGQDGQKGDKGDQGLPGFQGESGHKGDPGY
PGLPGQPGLPGIDGQKGERGLQGVPGFPGVKGSVGDFGFKGEVGDRGFPGEKGNDGPPGP
PGPHVFVKGDIGFPGIQGLPGPQGPTGFQGLKGQQGVTGISGPKGEEGLPGYNGQPGAKG
EPGLPGPQGPRGHPGPPGPDGVPGQLGPPGPSSMDHGFLVTRHSQTVDIPLCPEGTSLIY
DGYSLLYVQGNQRSHGQDLGSAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEP
MPMSMAPVTGQSIKPFISRCAVCEAPAMVIAVHSQTIMIPPCPQGWDSLWIGYSFVMHTS
AGAEGSGQALASPGSCLEEFRSSPFIECHGRGTCNYYANSYSYWLATIEDNEMFTKPVPT
TLKAGNLRTHISRCQVCMKRT
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcacactgttgctgctgctggcggctctctactccactgtagac
atgacaggggctgagggctgcggggcatcatgtggaaaatgtgactgcagtggtgtgaaa
ggagcaaagggtgaacgtggatttcctggtcttcagggtaatatgggatttccagggatg
cagggacatgaggggcctccaggaccaatgggccccaagggagatctgggtgagcctgga
gctcctggcctgaaaggagtgcgaggtcctcctggtctgccaggtttcccaggaaaccca
ggactgccgggcattaatggaaatgatggtccacctggtctacccggtatcccaggatgc
aacgggactaaaggagacagaggaagagatggtgctcctggttttcctggtcttcaaggg
cctcctggtatcgcaggagttcctggaatgaagggtgaccctggtggtgtgatggggatt
gctcccctgaaaggagaaagaggatatcctggccaacctggacggcctggaacaccaggc
cctcctggacctatcggacctccaggacctcgtggatatcaagggctcaaaggtgatgca
ggcccccctggtcctccgggagagaagggtgacaggctggcctttgtgagtgagaaagga
gataagggtgatcgaggatttcaaggcccccccggccctcctggaggttcaccaggggaa
gtggaaggacataccacaatatacgtacctggatcaccgggcgtaagaggacttccaggg
gacaaaggagacaaaggcttttgcgtcccttatcttgatggaatgaaaggagagcccgga
ccacctggacaaagaggtaaatctggtaaggatggagaggacggaccaaagggagaaaaa
ggcttttctggagctcctggtttgcctggttctcagggtgaaaagggagaaagaggacct
ccaggtcatggtgaaggcccccctggcccccctggctctcgtggtctcccagggttacaa
ggagaaaaaggtttcactggtcctcgtggagaagcaggtccgccaggtcggcacattgaa
ggtcctcgtggagagcagggtcagaagggagatgtgggcgaaaaaggagacaggggtata
gagggagagtctctggttggacctcctggacaacctggactcactggaccgcctggacca
cccggagaaccaattgatgctaatgaatgtgacattcagaagggagctcctggcccacct
ggacctccagggttacaaggggaagtgggacagaaaggtgacaaaggagatacctgtgtt
caatgtgagggcagtggcccacctggactacctggagaccagggtcctaaaggagaccga
ggacctcctggtgcagttggcggcaaaggagaaaagggtgttcctgggcttcctggacaa
cctggaagacctggttctcaaggaactcctggactgatgggggctcccggtgctgtcggt
gagccaggtgacatttacgtagctcctggtcttaagggagacaaaggtcttcctggtcaa
agtggtttaccaggtaaaccaggtgtggacggactacccgggagagatggcttaccgggt
caacctggtctcaaaggagaacccgccaaagaaggtatcaagggtgaacgtggaccagac
ggcaaccctggtcttattggaccaccgggagagaggggtccacctggtgtgccaggcttt
ggccgaccaggagagcctggagagaagggtagtcaggggagaccaggaattcctggagct
aatggaataccaggtgcaaaaggtgagccaggtgtagctgtgagctctcctggacctcag
ggggcacctggacctcgaggagaaactggtataactggaattcaaggtgacagaggcctt
ccaggagccccggggttgccaggttttcctggagacaagggtgaacatggaccacctgga
attggatttccaggcccatctggtcctaaaggaatcagtggaattccaggagcaccagga
ttaccaggagaaccaggaaggccagggcaggatggcttaactggaaaacctggtgtacct
ggacaaaagggtgaacctggaataggtcgtccaggtccaaaaggttcacagggtccccaa
ggaattactggcttccagggagataagggtggcatgggaatgcctgggattcctgggcaa
gaaggacagacaggaccaccgggacctcagggaatcaaaggtgaaattgggccacctgga
ccacctggacaggttggtgcaccaggtgcaccaggaaaaggctcacctggagctcctgga
ccacaaggaccacctggagagcctggaccatttgggagggaaggtgtaaagggagagaag
ggctacccaggtgctcctggtctagacatgccgggccctcagggagagaagggaacccct
gggttcccaggaatcccaggttccaaaggactaccagggccaccgggcttaccaggcagg
gacggatacatcggaaaccaaggtcctaaaggtgaaatggggttcataggaacaccggga
gtacctggaatacctggaccaccaggtactcctggatctcctggtctgagaggtgatcct
ggtattactggaccaagaggtgatattggagagcctggactgaagggagaaaggggagag
ccaggtattgcgggacctcctgggaacatgactaaaatcgaaatggaaaacatgaagggg
cagaaaggagagagtggagacacaggtatacctggagtcagtggagagaagggccaccaa
ggacttcaaggagaccctggaatgccgggcaaagatggagagcctggattacctggacaa
cctggtgagaaaggagactctggtgttcctggagagcctggcagtatgggacaacctgga
cagaagggcaacgttggggagatgggaataccaggtcctgttggtccaaagggtactaaa
ggagattttggtacaccgggacatcctggattcagaggcacagatggagaaaaaggagac
aggggaatacctggtgagccaggtatcgggctcccaggacgtccaggagaaaagggtcag
accggtcaggcaggattcccaggaatacctggagagaagggtcagaagggtcacgagggt
atgcctggcaagccaggactgcaaggatccaagggagaccaaggagccgttggctatcca
ggtcaggcaggtagaccaggtgagaagggcactcctggccttcctgggtctgcaggagaa
cctggtcgtgaaggccgacctggtgaaggtgggatgcagggacctccgggtcctcgtgga
gacaaaggagagcctggagtggacggcatccccggatcctcaggagagagaggagacccg
ggtatacctggtcacggtttgcctggatcacctggagcacttggtagcaaaggtgacaaa
ggtagtcctggttttcctggtgctccaggtcatgcaggtgtccctggtatcaaaggtgat
aaggggcttccaggcccacagggaccccagggtgagccaggagagcagggtcacccaggt
atctctctagagggccctaagggagagagaggagaaacaggacaacccggagaaggagga
tccccaggagcaccaggaccttctggcttgccaggccaagatggtcaaaagggagataaa
ggagatcagggtcttcctggtttccagggagagtcgggacacaagggtgaccctggatat
cctggacttcctggacaacctggccttccaggtattgatggacagaagggagagagagga
ttgcagggtgttcctggcttcccaggtgtaaagggttctgtgggggactttggatttaaa
ggagaagttggagacagaggattcccaggagagaaaggtaatgatggccctcctggtccc
cccggccctcacgttttcgtcaaaggagacattggtttcccaggaattcaaggtttgcct
ggacctcaggggccaactgggttccagggactgaaaggacagcaaggtgtgacaggtatt
tcaggtccaaaaggtgaagaaggtctccctggatataacggtcagcctggagccaaagga
gagcctggccttccagggccacagggacccagaggacatcctggacccccaggacctgat
ggtgttccaggacaactgggtccacctggtccctcttccatggatcatgggttcctggta
acacgtcacagccaaacagtggatattccattatgtcctgagggaacctcactcatatat
gatggctactcattgctctatgtacaaggcaaccagcgctctcatggacaggacttaggt
tcggcaggcagctgtctgagaaagttcagccccatgcccttcctgttctgtaacatcaac
aatgtgtgcaactttgcctctcgtaatgattactcctactggctcacctcacctgagccc
atgccaatgagtatggcacctgtcactggtcaaagcatcaaacccttcatcagcaggtgt
gctgtatgtgaagcccctgccatggtgatagcagttcacagtcagaccatcatgatccca
ccttgccctcaaggctgggactctttgtggattggctactccttcgtcatgcacaccagt
gctggtgctgagggttcaggtcaggctttggcctctcctggttcctgtctggaggaattc
cgcagttctccgttcattgagtgtcatggtcggggaacctgcaactactacgccaattcc
tacagctactggcttgccactatcgaagacaacgagatgtttacgaaacctgtccccaca
acgctaaaggcaggcaatctccgaacacacataagccgctgtcaagtgtgcatgaagagg
acataa
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integrated database retrieval system
