Amphiprion ocellaris (clown anemonefish): 111567037
Help
Entry
111567037 CDS
T06018
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111567037 (col2a1a)
04518 Integrin signaling
111567037 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111567037 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111567037 (col2a1a)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111567037 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
111567037
NCBI-ProteinID:
XP_023123656
Ensembl:
ENSAOCG00000011186
UniProt:
A0A3Q1B0K4
LinkDB
All DBs
Position
8:complement(23726443..23750816)
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPIIPSGECCPICPADASSPIETIGAKGQKGEPGDIADVVG
PKGPPGPMGPPGEQGARGEIGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGGAGEAGEPGPAGPMG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHSGLDGAKG
ETGAAGAKGESGAAGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPQG
APGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGVPGERGVAGAAG
PKGAPGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLSGKDGETGPAGPPGPAGPVGERGEQGQPG
PSGFQGLPGPSGAPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGSDGPKGAIGPAGAAGPQGPPGLQGMPGERGAGGIPGPKGDRGDNGAKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGPTGPSGAPGTRGAPGDRGEGGPPGPAGFAGPPG
ADGQPGAKGEVGEGGQKGEAGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGPAGKDGPKGTRGDAGPPGRQGDAGLRGPAGAQGEKGEPG
EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSGGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGAVGTKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPGGPPGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDSGAAGPAGPSGAKGPPGPAGPAGKDGANGQLGPIGPPGPRGRSGESGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETG
ETCVYPSIAKVPKKNWWTSKSKDRKHVWFGETMDGGFHFSYAQDGPAANAASVQLTFLRL
LSTEASQNLTYHCKNSIGYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKR
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaggcaggtggctgcatccaggat
ggccagcagtataatgataaggatgtgtggaagccagagccgtgtcgtatctgtgtgtgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagttcccccatt
gagacaattggtgctaagggccagaaaggagaaccaggagatattgcagatgttgtagga
ccaaaaggaccaccaggccctatgggccccccaggtgagcagggagcacgtggagaaatt
ggcgctaagggtgataagggaaatcctggacctagaggaagagatggtgagcctggcacc
cctggaaaccctggaccacctggaccacctggaccaccagggcttggagggaactttgct
gctcagatggctggaggttttgatgagaaggctggaggtgctcagatgggtgtgatgcag
ggaccaatgggtcctatgggtccccgtggtccacctggacctactggatctcctggacca
cagggtttccaaggtggcgccggagaggctggagagcccggtccagctggaccaatggga
cctcgtggaccacctggaccttctggaaaaccaggaagtgatggtgaagctggcaaacct
ggcaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttccaggcatcaaaggacacagaggtcattcaggtctggatggagctaaggga
gagactggtgctgcaggagccaagggtgagtctggtgctgccggagagaatggtgctcct
ggacccatgggacctcgtggtctgcctggtgagagaggacgccctggagctgctggagct
gccggtgcacgtggaaatgatggcttgcctggtcctgctggtccacctggacctgttggc
cctgctggagctccaggtttcccaggatccccaggagccaagggagaagctggtcctact
ggtgcccgtggagctgaaggagcacagggaccccgtggagagggtggtaccccaggatct
cctggacctgccggagcatcgggtaaccctggtactgatggtattcctggagctaaagga
tctgctggtgctcctggtattgctggtgctcctggattccctggcccccgtggcccacct
ggaccacagggagcgactggacctcttgggcccaaaggacagtctggagaccctggcctt
cctggattcaaaggtgaagctggacctaagggagagcttggccctgctggtcctcaaggt
gcccccggccctgcaggagaagaaggaaagagaggcgccaggggagagcctggagctgct
ggacccctcggacctccaggagagagaggagctcctggtaaccgtggtttccccggtcag
gatggtcttgctggtgctaagggtgtccctggtgagcgtggtgttgctggtgctgctggg
cctaaaggtgctcctggagatcctggacgcacaggagagcccggcctccctggagccaga
ggtcttactggtcgtcccggagatgctggtcctcaaggcaaagttggaccttctggtgct
gctggtgaggatggtcgccccggaccacctggtcctcagggagctcgtggacagccaggc
gtgatgggattccctggaccaaagggagccaatggtgaacctggaaagccaggagagaag
ggtcttgtgggtcgtcctggtctgagaggtctgtctggaaaagatggtgagactggtcct
gctggacctcctggccctgctggccctgttggtgagagaggagagcaaggacagcctgga
ccttctggattccagggtctgcctggaccatctggtgcccctggagaggctggaaaacct
ggagaccaaggtgtccctggagagggaggagctcctggtgctgttggacctcgaggtgaa
cgtggtttccctggtgagaggggtggtgctggagcacaaggtcttcagggacctcgtgga
cttcctggaacacctggaagtgatggacccaagggagctattggaccagctggtgctgct
ggaccccagggacccccaggcctgcagggtatgcccggagagagaggagctggtggtatc
cctggacccaagggagacagaggtgacaatggagcaaagggacctgagggtgctcccgga
aaggacggtgctagaggtttgactggtcctattggtcctcccggtccaagtggaccaaac
ggtgccaagggtgagactggacctactggccctagtggtgctcctggtactcgtggtgct
cctggtgaccgtggtgagggcggtcctcctgggcctgctggctttgctggacctcctggt
gcagatggtcagcctggcgccaagggagaggtcggtgagggcggacagaagggagaagct
ggtgctcctggaccccagggaccatccggagctcctggacctgtgggacccactggtgtg
tctggacctaaaggagcacgtggtgctcagggagctcctggtgccacaggtttccctggt
gctgctggcagagttggacctcctggccctaatggtaaccccggtgctgctggccctgct
ggccctgctggtaaagacggaccaaagggaactcgcggtgatgccggccccccaggaaga
cagggagacgctgggcttcgtggaccagctggcgcacagggagagaagggagagcctgga
gaggatggaccacctggtgctgatgggccttcaggtcctcagggtttggctggatctcgt
ggtattgttggtttgcctggtcagcgtggagagagaggcttccctggcctccctggacct
tctggagaacccggaaaacagggagctcctggttctggtggcgaccgtggacctcctgga
cctgttgggccccctggacttactggacctgctggagagactggtagagagggtacccct
ggatcagatggaccccctggcagagatggagctgttggaaccaagggagagcgaggtaac
actggtcctgctggtgcccctggagctcccggtgcccccggtgcccctggacctgttgga
cctctcggcaaacagggagacagaggagaggctggcgctcaaggacctggaggaccccct
ggaccagctggtgctagaggaatggctggaccccaaggaccacgtggagacaagggagaa
gctggagagactggcgagagaggacagaaaggtcaccgtggtttcactggtctgcagggt
cttcctggacctcctggtcccgctggagactctggagctgccggacctgctggaccaagc
ggcgctaagggaccacctggaccagccggacctgctggcaaagatggagctaatggacag
cttggccccattggacctcctggacctcgtggacgctctggagaaagtggccctgctggt
cctcctggaaaccccggaccccctggtcctcctggcccgcctggtcctggcatcgacatg
tccgccttcgctggcctgggtcagaccgagaagtctcctgatcctctcaggtacatgagg
gctgatgaggcttccagctctctgaggcagcacgacgttgaggttgattccacactgaag
tccctcaacaaccagattgagaacctgcgcagccccgacggctcccagaagaaccctgcc
cgcacctgcagagacctcaaactgtgccaccctgagtggaagagtggtgactactgggtt
gatcccaacattggcagcacagctgatgccatcaaggtcttctgtaacatggagactgga
gagacctgcgtctacccaagcatcgccaaagtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacgtctggtttggagagaccatggatggaggattccacttcagc
tacgctcaggatggccctgctgccaacgctgccagcgtccagctgaccttcttgaggctt
ctgtccactgaagcatctcagaacctcacttaccactgcaaaaacagcattggctacatg
gaccaggccacaggcaacctgaagaaggctttgctgctgcagggctccaacgatgtggag
atccgtgcagagggcaacagtcgcttcacttacagtgtgctggaggatggctgcaagaga
catacaggccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcctatggacatcggaggagcggatcaggagttcggagtggat
gtaggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
