Amphiprion ocellaris (clown anemonefish): 111567184
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Entry
111567184 CDS
T06018
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111567184 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111567184 (msh6)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111567184 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
nSTAND_NTPase5
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
111567184
NCBI-ProteinID:
XP_023123906
Ensembl:
ENSAOCG00000004934
LinkDB
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Position
16:complement(14807161..14814941)
Genome browser
AA seq
1376 aa
AA seq
DB search
MAKQSSLFNFFTKSPPSVSKPKPSPSPAEADLPSSVQKSNSSPKEQAKQTPTQQPAKDKK
VQQKSKSKTAGGGFKKLFGDKTPAAKDNSSTCPFSAGALVWAKLEGHPWWPCMVVPQPLT
GQQMRGRGRAQRIHVHFFDEPPTRGWVSVKYVREYQGSDSSDAKTGGVFFSGKPVIRRAM
ELADAVLFDTPEKRLKMPLCMDPSDDDDEEMELDNSVLTDEELSDVDEEKHEEAKPSKVC
QHSSRASTEKGNKAKRRRIIVASDSDGSDEEFKPEHAASSSEDEEEEGTVSSEEEEESTQ
ESEVESPIKPVKRKRPVEKSANTKAKLPTGPSAAPKRAPATVGANTKSRLSAFSAPDTFE
SQANGSGSTAGVTIWDHEKLEWVQDGRRKDSKRRRQSEDDYDPTTLYVPEDFLNRNTPGM
RRWWQLKSEMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPEIGFGRFS
DVLVQKGYKVARVEQTETPEMMEARCKTLAKPTKFDRVVRREVCRIITRGTQTYSVLDGA
PSESQSKFLLSLKEKAEEESSGQYRTYGVCFVDTSVGCFHVGQFPDDRHCSRLRTLIAHF
SPAEVLFEKSNPSIETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEEDYFKESADS
EQKSGFLPALLKKMTSETDSLCLTPKEGYEMALSALGGCIFYLKKCLVDKELLSMANFEE
YVPVDVEMEKADGPASFFAQTRQRMVLDGVTLANLEIFQNGSGGTEGALLERLDTCCTPF
GKRLLKQWLCAPLCNPTSIRDRLDAVEDLMGAQAQATEVSDLLKKLPDLERLLSKIHSIG
TPLKGQDHPDGRAVLYEEVTYSKRKIADFLSTLEGFKTMQEIISVFDQVFGEFRSTLLCQ
VVTVKTEKNGLFPDLSAELRRWETAFDHQKARTTGVITPKAGFDPEYDQALTGIRNCERE
LLDYLDRQKKRLGCKSMAYWGTGRNRYQMEVPDSVSERNIPEEYEVKSTKKGWKRYVTKE
SERLFSELQGYEEKRDAALKDCMRRLFYNFDKNYKDWKTGVECMAVLDVLLALSRYSQGG
EGPMTRPQVVLPEDNNQVAPFIDLTGSRHPCVTKTFFGDDFIPNDIFIGCSGSSEVEEEE
GRASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLGASDRIM
AGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKICCRTL
FSTHYHSLVEDYAKNPAVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFNAAR
LASLPEEVIQSGHRKAREFERSTVTLRLFKKLCLFAEDATLDSTHFASLLQLLNTL
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcacttttcaattttttcacgaagtctccgccgtcggtctccaag
ccgaagccgagcccttccccggccgaggcagacctgccctcctccgtacagaagtccaac
tcctctccgaaggaacaagctaaacagaccccgacacagcagccagccaaggacaaaaaa
gttcaacagaagagtaagtccaagactgccggcgggggattcaagaaactattcggcgac
aagaccccagcagccaaagacaacagctccacatgcccgttcagtgctggggcccttgtg
tgggcaaaactggaaggccacccctggtggccatgcatggtagtgccccaacctctgact
ggacagcagatgaggggccgtggtcgggcccagcgcatacatgttcatttctttgacgaa
cctcctaccagaggatgggtcagcgtcaaatatgtcagagagtatcaaggctctgacagc
agtgatgctaaaactggaggggtgttcttcagtggcaaacctgtaatccgtcgggcaatg
gagcttgctgatgcagtactgtttgacacccctgaaaaaagattaaagatgcctctctgc
atggatccatctgatgatgacgatgaagaaatggagcttgacaattcagtactgactgat
gaagagctcagtgatgtggacgaagaaaaacatgaggaagcaaagccctccaaagtttgt
caacattcatcccgtgcgtcaacagagaaggggaacaaagccaagcggcgtcgcattatt
gtagcctcagacagtgatggatcagacgaggaattcaaaccagaacatgctgcatctagc
agtgaggatgaagaggaagaagggacagtgagcagtgaggaggaggaggagagcacccag
gagtcagaagtagaaagccccattaagcctgtaaagcgcaaacgtcccgtagaaaagtct
gcaaatacaaaagcaaaactacctactggaccgtctgctgcacccaaacgagccccggca
accgtcggagccaacacaaagtctcgtttgtcagccttctcggctcctgacacctttgag
agccaggcaaatggatcaggctccaccgcaggtgtaactatttgggatcatgagaagctg
gagtgggtacaggatggcaggaggaaagacagcaaaaggcgccgacagtcagaggatgac
tacgatcccaccaccctgtatgtgccagaagactttctaaacagaaacacacccggtatg
cgtaggtggtggcagctcaaatctgagatgttcgatacagtgattttctacaaggtggga
aagttttatgagctctaccacatggatgctgtgattggtgtcaacgagctgggactaaca
ttcatgaaggggacctgggcacactctggctttccagagatcggctttggacgtttctca
gatgtgctggttcagaagggctacaaggtggctcgtgtggagcagacggagaccccagag
atgatggaggcacgctgtaagaccttggctaaacccacaaaatttgaccgtgtggtgaga
agagaggtgtgccgtattatcacacgcggtacccaaacttacagcgtgttggacggtgct
ccttcagagagtcagagcaagttcctcctgagtttgaaagagaaggctgaagaggaaagc
tctggtcagtaccgcacctatggagtctgctttgttgatacctctgtgggttgttttcat
gtcggtcagttcccagatgatcgtcactgctcacgcctgcgtactctgatagcacacttt
tcccccgctgaggtgctctttgaaaagagtaatccatccattgaaacacgcaaaatactc
aaagcctctctgtcctctgctctccaggaaggacttaatgctggaacacagttttgggat
gctcagaagactcttaaaaccctttcagaagaagattattttaaagagtctgctgacagt
gagcagaagagcggttttctccctgctcttctgaaaaagatgacctctgagactgattca
ctgtgccttactcctaaagagggctatgaaatggcattgtctgctttgggtggatgcata
ttctacctgaagaaatgtctggtagacaaagagttgctgtctatggctaacttcgaagaa
tatgtccctgttgacgttgagatggagaaagctgacggacctgccagcttctttgcccag
actcgtcagcgtatggtccttgatggagtgactctggctaacttggaaatctttcagaat
gggtcaggagggacagaaggggcgctgttggagcgtttggacacctgctgtaccccattt
ggcaagaggctgctgaagcagtggctctgtgctcctctatgtaaccccacatccatcaga
gacagactggatgcagtggaggacctgatgggagctcaggctcaagctactgaggtttca
gacctgctgaaaaagctccccgatctggagcgtctcctgagtaaaatccacagcattggc
actcctctgaagggccaggaccaccctgatggcagagcagttctctacgaagaggtcact
tacagcaagcgcaagatagccgacttcctctcaacactggaaggtttcaaaacaatgcaa
gagatcatttctgtcttcgatcaagtttttggcgaatttcgttccacattgctgtgccaa
gttgtcactgtgaagactgaaaagaatggcctctttccagatctctctgctgagctgagg
cgctgggagactgctttcgaccaccagaaagcccgcactactggtgtcataacccctaaa
gctggctttgaccccgagtacgaccaggctctgacaggaatcagaaactgtgagcgggag
ctgctggactacctggacagacagaagaagagacttggctgtaaaagcatggcctactgg
ggaactggacgaaaccgctatcagatggaggttcccgacagcgtctcagagaggaacatc
cccgaagagtatgaggtgaagtctacgaagaaaggctggaagcgttacgtgacaaaggag
agtgaacgcctgttctcagagctgcagggatatgaggagaagagagatgctgcactgaaa
gactgcatgaggaggcttttctacaactttgacaagaactacaaagactggaagactggt
gtggagtgcatggcagtgctcgatgtgctgctggctttgtcacgctacagccagggtgga
gaaggaccaatgaccaggccgcaggtggtgctcccagaggacaacaaccaggtagcaccc
ttcattgacttgaccggatcccgccacccctgcgtcaccaagaccttttttggggacgat
ttcattcctaatgacatcttcattggctgctcgggaagcagtgaagttgaagaggaggaa
ggtcgggcctcttgtgtccttgtcaccggaccaaacatgggtggaaaatctactctcatg
agacagtgtggactagtgatcattctagcccagctgggttgctatgttccagcagagagc
ctccgcttcacaccagttgacagggtcttcacccggctgggagcctcagatcgtatcatg
gctggagagagcaccttctttgtggagctgagcgagacggccagcatcctgcaccatgcc
actaaacactcacttgtgctcctggatgaattaggaaggggcacagccacatacgatggc
acagcgattgccagtgcggttgtgaaagagcttgctgagaagatctgctgtcgcactctc
ttctctacacattaccactccctggtggaggactatgccaaaaaccctgccgtgcgtttg
ggccatatggcgtgcatggtggaaaacgaatgcgaggatccaagtcaagagaccatcaca
ttcctctacaagttcatcactggcgcttgcccaaagagttacggattcaacgctgctcga
ctcgccagcctgccagaggaagtcattcaatcaggacacaggaaggccagagagtttgag
aggagcaccgtcactctcagactcttcaagaagctctgcctgttcgctgaagatgctaca
ctggacagcacacactttgcttcactccttcaactgctcaacaccctgtaa
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