Amphiprion ocellaris (clown anemonefish): 111568263
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Entry
111568263 CDS
T06018
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04518
Integrin signaling
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111568263 (col6a4a)
04518 Integrin signaling
111568263 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111568263 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111568263 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111568263 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111568263 (col6a4a)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111568263 (col6a4a)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111568263 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
111568263 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
VWA_CoxE
vWA_SIBA-E
GGDEF_2
Motif
Other DBs
NCBI-GeneID:
111568263
NCBI-ProteinID:
XP_054869682
Ensembl:
ENSAOCG00000011215
LinkDB
All DBs
Position
9:11243041..11332152
Genome browser
AA seq
2762 aa
AA seq
DB search
MEGRRRLLLCLVAAACFYGNAAQRTVCTQEAVADIVFMVDGSWSIGMENFEQIRQFLHTL
VNSFDVGPDHVRIGLVQYSTDPRTEFLLNTFQNKKDILHYISRLPYLGGGTHTGRGLDFM
LRNHFVEAAGSRAGQKVPQIAVVITDGKSQDMVEFHAEELRKRGIVLYAIGIKEADEDQL
KEIANEPHSQHVYSVSDFAALQGISQSIVQTLCTTVEEAKRQLLQLSQECAKASVADIVF
LIDGSSSIGISNFQEIRRFLRSVVSGLDIGADKVRVGVAQYSDEPYQEFLLKDHMDKQSL
LTAVDTFQYRTGGTETGEAIDFLLNQYFTEDAGSRINQRVPQIAVVITDGDSTDDVVAPA
VRLRQRGVIVFAIGVGKANPTELEAIANRPSQRFMFTIDNYEALQRLTDGLLQTVCISME
DQRQALAEKFADIFFLVDSGISQTDFQQVRNILMRLTNQLTFSASAHHLGLAQYSQDTKV
EFLLNTFQSKDEIQGAIKRFRLPRLQTNEPRNLGAALQYASTNFFTSAAGSRADQGYRQY
LVVLSGKDSDDQVYKQSRLIKSEGVTVVGMSLGASMNEIRLISTAPYVYPSISNAVPTLR
SIFETEVENTTLSGDCKAAKLADIVFIVDESGSIGVANFQLVRTFLHSIVSGLEISPTRV
RVGIVMYNDRPTAQVYLNTFNDKDELLKFIKILPYHGGGTNTGAALKFARESVFIKQRGS
RKDKGVQQVAVVITDGESQDDVSQPAADLRRAGVTVYSVGVKDANKVQLVEMASHPPNKH
MFIVDTFAKLKSMEQSLQKILCYNIIRQAVSVNTRRTGIKEGCVQTDEADIFFLIDHSGS
IYPTDFQDMKKFIIEFLHTFRISPQHVRLGVAKYADSPNLEFDLTTYSDMKSLEKAVKDI
RQIGGGTETGRALEFMGPYFDRAMASRGHKVSEYLVVITDGKSSDEVKAPAEKLRSQGVI
VYSIGVKNADMEELREISGDPKRTFFVNNFDALKPIKDDIITDICSQDACKDIPGDLLFL
IDSSGSIYPQDYNKMKDFMKSVIGKSFIGQNKVHVGVMQFSTIQKLEFPLNRFYSKEEMS
KAIDNMQQIGGGTHTGEAITDVSQYFDASRGGRPDLRQRLVVITDGEAQDEVRRPAAALR
AKGVMVYAIGVVDANTTQLLEISGSPDRMYAERDFDALKDLESQVALELCDPERDCKKTE
KADIIFLVDGSTSITLQKFRNMQKFMESMVNQTTVGKDLTRFGVILYSNDPTSIFTLNQY
SSRKEVLKAISDLKSPYGDTYTGKALDYSLQFFNAQHGGRAALQVPQILMVITDGDATDR
NSLVAPSLALRNSGVSVFSIGVEGANMTQLEIMAGYDRSKVFYVDNFDALETLYKNITHV
LCNSTKPACEKQKADLVFLIDQSGSIASTDYTIMKKFTTELISSFKVSEDLVRVGLAQFS
SNFQNEFYLNQFYAEKAMSQHILKMRQLGGGTNIGLALDSIREYFEASRGCRISAGISQN
LVLITDGESQDDVEDAADRLRALGIEVFAIGIGNVHDLELLQITGTPERLFTVENFGSLE
KIKQKVVNTICKSRPISIISSCSIDIAMGFDISQRRGLPGETLISGHSKLQTFLPEIAHY
VSSVPGLCCTGPAPISTNIAYRVVGRDGRSLYDFNFEGYSEDVVKKVMTLSLTEPTYFNT
AMLKSFGEKFKAQSGAGVKVLLIFSDGLDEDVMKLEQESELLRQSGVSALLTVALEGVRD
VAQLQMVEFGRGFGYRLPLSIGMPSIGSTVLKQIDTVSDRECCNVMCKCSGHEGIRGSRG
LPGSKGVSGQKGYSGFPGEEGVAGDRGSPGPSGPQGVQGCSGRRGLKGFRGLRGNRGEDG
EDGLDGVNGEQGVTGADGGRGERGNPGSPGIPGIQGEAGLKGQRGLRGDPGEPGADNNLP
GAKGDPGNAGLPGIPGPDGRPGESGIVGNPGQNGRRGPPGEKGAAGEPGAAGLQGIPGPS
GSQGTRGVGGQPGPRGVPGLPGPQGGPGSVGGPGAAGRRGGNGQKGQPGDPGDKGVPGPL
GPRGMPGEDGRDGYGPAGPKGVKGDPGFPGYPGLMGEDGLQGPKGLPGRKGNLGRGGNSG
RPGDSGIAGDPGYAGHRGPRGPPGVKGMTECQLITYIRDNCACSIGQSLCPAYPTELVFG
LDMSDDVTPAAFERQRSALLSLLEDVNIAESNCPTGARVAVVGYNAYTKYLIRFQDYRRK
TQLEDAVRNIALERTSNKRHLGATMHFVAQNVFKRVRAGMVMRKVAVFFSNGPSQEVNDI
TGAVMEYRGLDIIPAVISLRNAPAISRALEVDDTGNSIFMVLGRQQDQAADLRKIKNCAI
CYDPCRRPDECSFIQEPVRPQEVDVDLVMVADSSREMQADQYAGVKQLLGSIVEQLAVSP
QPRRAGNRARVAVVQQSGSRSANVEFNLQTYQNQELMKAHLIQKMQQQGGSSALGWTLDY
TLKQVLLKAGQPSRRKALLAVVGTPTAWEDQARLHYVSQKAKCEGVALFVVTVGDHYNRT
QVEELASLPLQQHLIHVSRLKAGEQDYAQRFFRVFLSAFSKGMNTYPPPSLKRTCDELSS
QDEGQIFIAGQGSATLGEEETFQEHRGQTQTGQLDIIETLTRRDGQRLHLSGRCQLDSDS
GIQCADFVQVWFFDKHIGACSPFWYGGCGGNANRFNTEHECFRTCVAHNPNIVLKTQLAS
FVSKDACFLSQDQGGCQNYTMMWFFDTEQNECSRFWYGGCGGNENRFKTQEECENLCLTK
SR
NT seq
8289 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaggcggcgtcttctgctctgcctcgtcgctgcagcgtgtttctatggcaac
gccgctcagaggacagtgtgcacacaagaggccgtggccgacatcgtgttcatggtggac
ggctcgtggagcatcggcatggagaacttcgagcagatccgccagttcctccacacgctg
gtgaacagcttcgacgtcggccccgatcacgtccgcatcggcttggtgcagtacagcacc
gacccacgcactgagttcctgctcaacaccttccagaacaagaaggacatcctgcactac
atcagcaggctgccgtacctgggcggtggcactcacaccggcagaggcctggacttcatg
ctgaggaaccactttgtggaggccgccgggagccgggctgggcagaaggtgccgcagatc
gccgtggtgatcaccgacggaaaatctcaagacatggtggagttccacgccgaggagctg
aggaagaggggcatcgtcttgtacgccattggtatcaaagaagcagacgaagatcagctg
aaggagatcgccaacgagccgcacagtcagcacgtgtacagcgtgtcggacttcgccgct
ctgcaggggatttctcagagcatcgtccagacactgtgcacgactgtagaggaggccaaa
cgacagctcctgcagctgtcacaagaatgtgccaaagccagcgtggccgacatcgtcttc
ctgattgacggctcctcgagcatcggcatctctaactttcaggaaattaggcggttcctc
cgcagcgtcgtctcaggcctcgacatcggtgccgacaaagttcgtgtcggcgttgctcag
tacagcgatgagccctaccaggagttcctattgaaggaccacatggacaaacagtccttg
ttgaccgcagtggacacatttcagtaccggacaggaggcacggagaccggcgaggccatc
gacttcctcctgaaccagtacttcacggaggatgcgggcagtcgaatcaatcagcgagtg
cctcagatcgccgtggtcatcacagacggcgactccactgatgatgtcgtagcaccggct
gtacgcctgaggcagcgcggggtgatcgtgttcgctatcggggtgggaaaggccaaccca
acggagctggaggccattgccaaccgcccctcgcagcgcttcatgttcaccatcgacaac
tacgaggctctgcagaggctgacggatggtctgctgcagactgtgtgcatctccatggag
gaccagaggcaagccttggcagaaaagtttgccgacattttcttcctggtggacagtggc
atctctcagaccgatttccagcaggtccggaacatcctcatgcgactcactaatcagctg
accttcagcgcctcggcccaccacctcggactggcccagtacagtcaggacaccaaggtg
gagtttctgcttaacaccttccaaagcaaagatgagatacagggcgcaatcaaacgcttc
cgcctgccccggcttcagaccaatgagcctcgcaatctgggtgccgccctgcaatacgcc
agcacgaacttcttcaccagcgctgccgggagccgggcggaccagggctaccgacagtac
ctggtggttctcagcgggaaggactcggatgatcaggtgtacaaacagtcccgtctgatc
aaatcagaaggtgtaactgtggtggggatgagcctcggtgcctcgatgaatgaaatccgt
ctgatctccacggcgccgtacgtctacccgtccatcagcaacgcagtgcctacactgagg
agtatctttgaaacagaggtggaaaacaccacgctgtctggagattgcaaagctgccaaa
ctggctgacatcgttttcatcgtcgacgagtccggaagcatcggagtcgccaacttccag
ctggttcgtacgttcctgcactcgatcgtcagcggcctggagatcagtccgaccagagtc
cgagtgggcatcgtgatgtacaacgaccggcccacggcgcaggtctacctcaacaccttc
aacgacaaggacgagctgctcaagttcatcaaaatcctgccgtaccacggcggcggaacc
aacaccggagccgccctgaagtttgcccgcgagagcgtcttcatcaagcagcgaggaagc
aggaaggacaagggcgtccagcaggtggcggtggtcatcacggacggagagtcgcaggat
gacgtgagccaaccagcggctgacctccgtcgcgccggagtcactgtttactctgtaggt
gtcaaagatgccaacaaggttcaactggtggagatggcgtcgcatccgcccaataaacac
atgttcatcgtagacactttcgccaaactgaagtctatggagcagagtctgcagaaaatc
ctgtgctacaacatcattcgacaggcggtctcagtcaacaccagaagaaccggcatcaaa
gaaggttgtgtacaaacggatgaagcagacatcttcttcctcattgaccactcaggaagc
atttatcccactgacttccaggacatgaagaagttcatcatcgagttcctgcacaccttc
cgcatcagcccacaacatgttcgcctgggggttgcaaagtatgcagattctccaaattta
gaattcgacctgacgacctactcggacatgaagtccctggagaaggctgtgaaagacatc
aggcagataggaggcggcacagagacggggcgagcactggagttcatgggtccatacttt
gacagagcgatggcgtctcgcggtcacaaagtgtcggagtacctggtggtcatcactgac
gggaaatcctccgacgaggtcaaggctccagcagagaagctgagatcgcagggtgtcatc
gtctactccatcggggtgaagaatgcagacatggaggagctgcgagagatttctggcgac
cctaagaggacgttctttgtcaacaattttgacgccctgaagcccatcaaagatgacatc
atcacagacatctgctcccaggacgcctgcaaagacataccaggtgacctcctgttcctg
atcgacagctcagggagcatctacccacaagactacaacaaaatgaaagacttcatgaaa
tccgtcatcggtaagtccttcattggccagaacaaggtgcacgtcggagtcatgcagttc
agcaccatccagaaactcgagttccccctcaaccgcttctacagcaaggaggaaatgtca
aaagccatcgacaatatgcagcagatcggcggaggaacgcacacaggagaagccatcaca
gacgtgtctcagtactttgatgcctccagaggaggacgtccagacctgcggcagagactg
gtggtgattacagacggagaggcccaggacgaagtcagacgccccgctgcagctctgaga
gccaagggagtgatggtctacgccatcggagtggtggacgccaacaccacacagctgctg
gagatcagcggctccccggacaggatgtacgctgagagggacttcgacgctctgaaggac
ctggagagtcaggtggccttggagctgtgtgatccagagagagactgtaagaagacagaa
aaagctgacattattttccttgtggacggttctacaagcatcaccttgcagaaattcaga
aacatgcaaaagttcatggagtcgatggtgaaccagacgaccgtcggcaaagacctgact
cgcttcggtgtcatcctctactccaacgacccaacatctatcttcactctgaaccagtac
agctccaggaaggaggttttgaaagcgatatcggaccttaagtccccgtacggagacacc
tacaccggaaaggctttggattactctctgcagttctttaacgctcaacatggcggtcga
gcagcgctgcaggtgccgcagattctcatggtgatcacagacggagacgctactgaccgc
aacagtctggtggcgccgtctctggcgctgcgaaacagcggagtgagtgttttcagtatc
ggagtggaaggagctaatatgacgcagctggagatcatggccggttatgacaggtccaaa
gttttctacgtggacaattttgatgccctggagactctgtacaagaacatcactcatgtc
ctctgcaactccaccaagccagcttgtgagaaacagaaggctgacctggttttcctgatt
gatcagtctggcagcatcgcttcaaccgactataccatcatgaagaagttcaccaccgaa
cttatcagcagttttaaagtcagcgaggatttggttcgcgttggattggcccagttcagc
agcaacttccagaatgagttctacctcaaccagttctacgccgagaaggccatgtcccag
cacatcctcaaaatgcggcagcttggcggaggaacaaacatcggcctcgcgctggactcc
atcagggaatacttcgaggcgtctcggggctgccgcatatctgctgggatctcccagaac
ctggtgctgatcacagacggcgaatcgcaggacgacgttgaagacgctgccgatcgcctc
agagctctggggattgaagtgtttgccatcggcatcggaaacgtccacgatctggagctg
ctgcagatcaccggcacaccggagaggctgttcacggtggagaacttcggcagcttagag
aagatcaagcagaaggtggtcaacaccatctgcaagtccagacctatcagtattatctca
agttgcagcatcgacatcgccatgggatttgacatttctcaaagacgtggacttcctggt
gagacgctgatcagcggccacagcaaactccagaccttcctgccagagatcgcccattac
gtttcctcggtaccaggcctgtgctgcaccggccccgcccccatcagcaccaacatcgcc
taccgagtggtgggccgtgacggacgatcgctgtacgacttcaacttcgagggctacagc
gaggacgtcgtaaagaaggtcatgaccctgagtctgacggagcccacttacttcaacacc
gccatgctgaagtccttcggagagaagttcaaggcccagtccggagctggtgtgaaggtg
ctgctgattttctcagatggacttgacgaagacgtgatgaagctggagcaggaatcagag
ctgctgcgacagtccggcgtcagcgctctgctcactgtggccctggagggagttcgtgat
gtcgcccagctgcagatggtggagttcggccgagggttcggctacagactccctctgagc
atcggcatgccgagcatcggcagcaccgtcctcaaacagattgacacggtgtcggatcgg
gaatgctgcaacgtcatgtgcaaatgttcaggacacgaaggaatccgcggctctcggggg
cttccaggctcaaagggtgtgtccggacagaagggttactctggcttcccaggagaggag
ggcgtcgctggcgatcgggggagtcctggaccgagtggacctcagggtgtccagggctgc
tctggacgcagaggactgaagggctttcgaggtctgcgggggaaccggggagaagacgga
gaggacggactggacggagtcaacggagaacagggagtgacgggagccgacggaggccga
ggagagcgaggaaaccctggaagcccaggtatcccaggtatccaaggagaggcgggactc
aaaggacagcgaggacttagaggagatccgggagagccgggtgctgataacaacttgcca
ggagccaaaggagaccctggaaatgcaggtttaccgggtattcctggaccagatgggcgg
ccaggtgagagcggaattgtcggaaacccgggtcaaaatggaagaagaggccctccgggt
gagaagggtgcagctggagagccgggagctgcaggactgcagggcatcccaggtccttca
ggttcacagggcaccagaggggtcggaggtcagcctggacccagaggagtccccggcctt
cctggacctcagggtggaccaggatcagtcggaggccccggagcagccggacgccgaggt
ggtaacggacaaaagggccaaccaggagaccccggtgataaaggtgttccaggaccacta
ggacccagaggaatgccgggtgaggatggaagagacggttatggacctgcaggacctaaa
ggtgtaaagggagatcctggtttccctggttatcccggtctgatgggtgaggacggtctg
cagggacctaaaggacttccaggacgtaaagggaacctaggtcgaggcggaaactcagga
cggccgggagattcagggattgctggagatccaggatatgcaggacacaggggtcccaga
ggtcctccaggtgtcaaaggcatgactgagtgtcagctcatcacctacatcagagacaac
tgtgcttgttccatcggtcagtcgctgtgtccggcctaccccactgagctggtgtttggt
ctggacatgtccgacgatgtgacgccagccgccttcgagagacagcgctcggccctcctg
tccctgctggaagacgttaacatcgccgagagcaactgtccgacgggcgctcgcgtggcc
gtggtgggatacaacgcctacaccaagtacctgatccgcttccaggactaccgccgcaag
actcagctggaagacgccgtgaggaacatcgccctggagaggacgtccaacaagcgtcac
ctgggcgccaccatgcacttcgtagctcagaacgtcttcaagcgcgtccgagcagggatg
gtgatgaggaaggtggcggtcttcttctccaacgggccgtcgcaggaggttaatgacatc
acaggcgccgtgatggagtaccgggggctcgacatcatcccagcagtcatctctctgagg
aacgcccccgctatcagtcgagcgttggaggttgacgacactggaaactctatcttcatg
gtgttggggaggcagcaggaccaagctgctgatctgaggaagatcaagaactgtgcaatc
tgttacgacccgtgcagacgtccagacgagtgctccttcatccaggagccggtgcgtcct
caggaggtggacgtggacctggtcatggtggccgacagctccagggagatgcaggccgac
cagtacgccggcgtaaagcagctgctgggttctatagtggagcagctggctgtgagccct
cagccccgcagagccggcaaccgggcccgagtggccgtggtccagcagagcggctcccgg
tccgccaatgtggagttcaatctacagacctaccagaaccaggagctgatgaaggctcac
ctgatccagaagatgcagcagcagggcggctcctcggcgctgggatggacgctggactac
accctgaagcaggtgctgctgaaggccggccagccgtccaggaggaaggctctgctggcc
gtggtgggaaccccgacagcctgggaggaccaggccaggctgcactacgtctcccagaag
gccaagtgcgagggggtggcgctgttcgtggtgacggtcggcgatcactacaaccggacg
caggtggaggagctggccagtctgccgctacagcagcacctgatccacgtcagcagactg
aaggctggcgagcaggactacgcccagcgcttcttcagagtcttcctgtccgccttcagc
aagggaatgaacacgtatcctcctccctctttaaaacggacatgtgacgagctgagcagc
caagatgaaggacagatattcatagcaggtcagggctctgctacgttgggggaggaggag
acgtttcaggagcaccgaggacagactcagaccggacagctggacatcatcgagactcta
accagaagagacggacagagactccacctcagcggccggtgtcagctggattctgactct
ggcatccagtgtgccgactttgtccaagtatggttctttgacaaacacatcggtgcatgc
tctcccttctggtacggcggttgcggcggcaacgccaaccgctttaacacagaacatgaa
tgtttccggacatgtgtcgcccacaatccaaacatcgtgctgaagacgcagctcgccagc
ttcgtctctaaagacgcctgcttcctcagccaggaccagggcggctgccagaactacacc
atgatgtggttcttcgacaccgagcagaacgaatgctctcggttctggtacggcggctgc
ggcggcaacgagaaccgcttcaagacacaagaggagtgcgagaacctgtgtctgacgaag
agtcggtga
DBGET
integrated database retrieval system
