Amphiprion ocellaris (clown anemonefish): 111569381
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Entry
111569381 CDS
T06018
Symbol
pabpc1a
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
aoce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111569381 (pabpc1a)
09123 Folding, sorting and degradation
03018 RNA degradation
111569381 (pabpc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111569381 (pabpc1a)
03041 Spliceosome [BR:
aoce03041
]
111569381 (pabpc1a)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111569381 (pabpc1a)
mRNA cycle factors
Stress granule specific factors
111569381 (pabpc1a)
Spliceosome [BR:
aoce03041
]
Complex C
Other components
Complex C specific factors
111569381 (pabpc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
Motif
Other DBs
NCBI-GeneID:
111569381
NCBI-ProteinID:
XP_023127214
Ensembl:
ENSAOCG00000011656
LinkDB
All DBs
Position
9:33288043..33293807
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFGKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQTFNAIRATATTNTQVPRM
MASQRMPTQALSQRPASASATAAPVRTMPQYKYAAGVRNPQQHMASQPQVTMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagcgcgcctagctacccgatggcctccctctatgtgggagacctgcaccca
gacgttaccgaggccatgctctacgagaaattcagcccggctgggcccatcctctccatc
agagtctgcagagacatgattactcgtcgttccctaggctatgcctatgtcaacttccag
cagcctgctgatgctgagcgggccctggacaccatgaactttgatgtgatcaaaggcagg
cctctccgcatcatgtggtcacagcgtgacccttcactgaggaagagtggagtaggcaac
atcttcatcaagaacctggacaaatctatcgataacaaggccctctatgacaccttctct
gcatttggaaacatcctgtcttgtaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccacgaggctgctgagcgggccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtatttgttggacgctttaaatcgcgtaaagagagagag
gcggagcttggagctcgtgccagagagtttaccaatgtttacatcaagaactttggggag
gacatggatgatgagaagctaaaagaattgtttggcaaatatgggcctgcccttagtatc
cgggttatgactgatgagagtggcaaatccaaaggttttggttttgtcagttttgagaga
catgaagatgcacaaaaggctgtggatgacatgaatggtaaagaactgaatggcagacaa
gtgtatgtgggccgtgcacagaagaaaggggagcgtcagaatgagctgaagcgcaaattt
gagcaaatgaaacaggaccgcatgaccagatatcagggtgtcaatctgtatgtgaaaaac
ctggatgatggcctagatgacgagcgtctgcgcaaagaattctctccatttggaaccata
acaagtgcaaaggtaatgatggagggtggacgcagcaaaggctttggctttgtgtgcttc
tcctcccctgaggaggccactaaagctgtgacggagatgaatggtcgcattgtggctaca
aagccgctgtatgttgccctggctcagcgaaaggaggaacgtcaggctcatctaaccaac
cagtacatgcagaggatggcaactgtccgtgctgtgcccaacccagtcctcaacccatat
cagcctgctccaccctcaggctatttcatggcagctataccacaggcccagaaccgtgct
gcatactactctgccaaccagctggcccagctccgccccagcccgcgttgggccactcaa
ggagtccgacctcaacacttccaaaacatgcccaatgctatgcggccatcagcaccaagg
ccccagaccttcaacgccatccgtgctacggcgaccaccaacacacaggtcccacgcatg
atggcttcccagcgtatgcccactcaggcactcagccagcgacctgccagtgcttctgcc
actgccgctccagtgcgtaccatgccccagtacaaatatgctgctggtgtgcgcaatcct
cagcagcacatggcctcccagccacaggtcaccatgcagcaaccggcggtccatgtccag
ggacaggagcccctgactgcctccatgctggctgctgctccccctcaggaacagaagcag
atgctgggtgagcgtctgtttcccctgatccagaacatgcaccccagtctggcgggcaag
atcactggtatgcttctggagattgacaactcagagctgcttcacatgctcgagtcaccc
gagtcactgcgctcaaaggtggatgaggcggttgctgtgcttcaggcccatcaggctaag
gaggctgctcagaagtccaccacccctgctggtgttcccagcgtctaa
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