Amphiprion ocellaris (clown anemonefish): 111569652
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Entry
111569652 CDS
T06018
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111569652 (scaf8)
03041 Spliceosome [BR:
aoce03041
]
111569652 (scaf8)
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111569652 (scaf8)
Spliceosome [BR:
aoce03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
111569652 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
111569652
NCBI-ProteinID:
XP_023127681
LinkDB
All DBs
Position
20:complement(19363485..19394389)
Genome browser
AA seq
1417 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQNLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERSEESKKDTSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMSIEGQDSIFGQENSVAGAQSSSQSQLPEPENKL
DDSIDNQQQDMDLDEGPDGMEEEIFEGEEKKTLSTRSRTRSRSRSRSPKRRRSRSRSGSR
KRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQ
VDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIGSKI
IKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGIIDQETVNDEWEAAK
NSESAKEIISQPVSAETTLASNTQTETYNQQVTMMPVQIPVAQAVPSAVGLVPPNFPVTM
GIPPPGFGPPPPFIRAGFNTSQPPPGFLHAAQTAGMAAATTSLVQPSVPSSQDAVKESPF
SAMIPPTSAIPGSFMPSAIPGAGVFNPVGVQTQQAANEKAPQSAEGMDAAAELTLQGMQN
AVRSGMGLLGMHPSASLTHQLHQSGLSGQRMPGLLPLDVRPNILQPGAAARFPLLMQQGP
AQQAAGLLESTLQAQARARGPFPQLDPFNRVPNLTNENLSKAEDESSSGADEGKDQDYRF
PPMEKQSTGLLRTPPPEHKESLGSGGGAVGGGGRPPLLQTPGTQPARSSLVGRLQALAGF
TPDNRWNQGRGDFDERDSMRGGPQAPGGPKGFQDERPTTGPNFPNRFDNRPGTAGGAAGV
SANAGAVGGPQVWNRSGGTTAPFGNELHQDLDDRRRPWDRQRDRDERDFDFRREMNGNRH
SRERERERERERDRERGRDRTREHERDRDHEKDRERERDRERGGWTPLLPLPTPLLPTPP
LNPNLTLNQGKLLAPLKLNPQIQSRFQSPLLPQAQPKPSLLGQPMPQVQIKSPPASQNQA
AVPEPQSETPAPSETPLVQSPPSTHSPVASSDNKGQSPSTEALAQSESSSQSATPPHTES
PSQPTAQSPSKTTASPDTETPSHVSPLADASSQDSPVAFTRAASPPEDTTQSLEEQESPQ
KDEEQSQDRASSPQPQWVNGPGMDNITVAEPTPEASPEPSPEPTPDPSYDSLLPESEKEP
QQEQVSSPKDVDNEQSEPMEEATSQPVVDTVTDTEGT
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcatttaacaatgagttgtactcattgaatgagtacaagccgccc
atctccaaggccaagatgactcagatcaccaaatctggaatcaaggctataaaattctac
aaacacgttgttcagagtgtggagaagttcatacagaagtgcaagccagaatacaaggtc
ccagggctctatgtcatcgactcaattgtcagacagtcacgacaccagtttggcacagag
aaggacgtttttgcaccacgcttcagcaagaacattattgcaacgttccagaacctctat
cgttgcccttcagatgataagagtaagatagtgcgagtcttgaatctgtggcaaaagaat
gcggtcttcaagagtgacatcattcagcctctgctagacatggcagcagggattcctcct
cccagtgttactcctgtcatgcccagcagtgctgccccggtcaataacactacacccggt
accccagctacaccggccaccccagccaacatagtccagggtttgcctgactgggcttcc
cagatcaccaacacagacactgtggctgccgtggcacaaatcttacaaagcccccaggga
caacagctgcagcagctggtgcagagtctgcagatgcagcagcagaagccccagccgtct
ctgctgcaggccttggacgccggcctagtggtgcagttacaagccctgacagctcaactc
actgcagctgccactgccaatagcctcaaccccttggagcagagggtctcctcttttaat
aagaaacttttgggtccttttgactttgggaacgattctgaacgcagtgaggaatctaaa
aaagacacttcgtcgtctcagctacccatggtgtccgagcccattaacagctccctcttc
catcaactggctgagcagcttcaacagcaaaacctggagcagtttcagaagcagctgcta
gagcaccagcagaaggcaatgagcatagaaggacaggactcaatctttggacaagagaac
tctgtggcgggtgctcagagcagcagccagtcacagcttcctgagccagagaacaagttg
gatgattccatagacaaccaacagcaggatatggatcttgacgagggcccagatggaatg
gaggaggagatctttgagggagaggagaagaagaccttaagcacacggtccagaacacgc
tcaaggtctcgctcccggtctcccaagaggagaaggtccaggtcccgctcaggctcacgg
aaacgtaagcaccgcaagcggtctcgttcacgctccagagatcgtaagaggaagtcgtca
cggtcatactcaagtgaaagacgggccagagaacgagaaaaggagcggcagaagaaagga
ctgcctcccatacgatccaagactcttagtgtgtgcagcacaactctgtgggtgggccag
gtggataagaaagctactcagcaagacctcaccaatctgtttgaagagtttggccagatt
gagtcaatcaatatgatccctcccagaggctgtgcctacatctgtatggttcacagacag
gatgcataccgtgcccgtcagaagctcagcacgggctctttcaagattggctccaagatc
attaagatcgcatgggctctgaacaaaggtgtgaagcaggagtacaagcagttttgggat
gtggacctgggtgtcacctacataccttgggagaaggtcaaggtagatgacctggatggc
tttgccgaagggggaatcattgaccaggagaccgtcaatgatgagtgggaagcagccaag
aattctgaatcggccaaggaaatcataagtcagccagtaagcgctgagacaacattggca
tctaatacccaaactgagacctacaaccagcaggttaccatgatgcctgtacagatacca
gtggctcaggcagttcccagcgcagttggtttggtgcctcctaacttccctgttactatg
ggcatacccccaccaggcttcgggccgccaccacctttcataagggctggcttcaatacc
tcacagcctccaccaggttttttgcatgctgcacagacagcaggcatggctgcagcaact
acttcgctagtgcagccttcagtgccctccagccaagatgctgtcaaggaatctccattt
agtgctatgattcctccaaccagtgctatccctggtagcttcatgccctcagccatccct
ggagccggtgtgttcaacccagttggagtccaaactcagcaagcagccaatgagaaagct
ccacagtctgccgagggtatggatgctgctgcagaacttacgctgcaaggcatgcagaat
gctgtccgcagtgggatgggtctgttaggcatgcacccttcagcttctctcacccaccag
ctccatcagtctggtctgagtgggcagagaatgcctggcctgctgcctctggatgtgcga
cctaacatcctccaacctggtgctgctgctcgcttcccactgctcatgcagcagggcccc
gcccagcaagctgctggcctcctagagagtaccctccaggctcaagcccgtgccaggggt
cccttccctcagctagaccccttcaacagggtgcccaacctgaccaatgaaaatttatcc
aaagcagaagacgagtcttcctctggggctgatgagggtaaagaccaggactaccgcttc
cctccaatggaaaaacagagcacaggcctgctgcggacccctccaccagagcataaggag
tcccttggaagtgggggaggagcagttggaggaggaggcaggcctcccttgctccagacc
ccagggacccagccagccagatccagcctagtaggacgtctgcaggctcttgcaggcttc
actcctgataaccgctggaaccagggaagaggggactttgatgaacgagatagtatgcga
ggaggcccacaggccccaggtggtccaaaaggcttccaggacgagcgccccacaacaggg
ccgaacttccccaaccgttttgacaaccgtcccggcacagcagggggagcagctggtgtt
tctgcaaatgctggagcagttggggggccacaagtctggaaccgtagtggtggtaccaca
gctccttttggcaatgaactgcatcaagacctagatgaccgaagacgcccatgggacagg
cagagagacagagatgaaagagattttgacttcaggagggagatgaatggtaaccgccat
agccgtgagagagaacgggagagggagcgtgagagagacagggagcgaggccgagaccgc
accagagagcatgaacgcgacagagaccatgaaaaagacagggaacgtgagagggaccgt
gaacgtggaggctggacaccacttctccctctgcctacacctctgcttccaactccacct
cttaatcccaacctcacactgaaccaaggcaaactgctggccccactcaaattaaaccct
caaattcagtcacgattccagtccccacttttgcctcaggctcagcccaagccctccctc
ctgggtcagccgatgcctcaggttcagattaagtctcctcctgcttcgcagaaccaggca
gctgtgcctgagccccaatcagaaaccccagctccatctgagacaccccttgtacagtca
ccaccctcaacccattctcctgtcgcatcatctgacaacaaaggtcagagcccatcgact
gaagctctcgctcagtctgagtcttcatcgcagtcagcaacacctccacacacagaatca
ccatcccagcccacggcccagtccccctccaagaccactgcttctccagacactgagacc
ccaagccatgtctcaccactggctgatgcctcatcccaggactcacctgtggccttcaca
cgagctgccagcccccctgaagatacaactcagtctctggaggagcaggaaagcccacag
aaggatgaggagcagtcgcaagatagagcctcctcgccccagccacagtgggtcaatgga
cctgggatggacaatatcactgtggctgagcccacacccgaggcctctcctgagccctct
ccagagcccactccagacccttcctatgattctttgctccctgaaagtgaaaaggagcca
cagcaggagcaagtttcgtctcctaaggacgtagacaatgaacagagtgagcccatggag
gaagctacgagtcagccagtggtagacactgtcacagacactgaggggacataa
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