Amphiprion ocellaris (clown anemonefish): 111569726
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Entry
111569726 CDS
T06018
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03030
DNA replication
aoce03420
Nucleotide excision repair
aoce03430
Mismatch repair
aoce03440
Homologous recombination
aoce03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111569726 (rpa1)
03420 Nucleotide excision repair
111569726 (rpa1)
03430 Mismatch repair
111569726 (rpa1)
03440 Homologous recombination
111569726 (rpa1)
03460 Fanconi anemia pathway
111569726 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aoce03000
]
111569726 (rpa1)
03032 DNA replication proteins [BR:
aoce03032
]
111569726 (rpa1)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111569726 (rpa1)
Transcription factors [BR:
aoce03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111569726 (rpa1)
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111569726 (rpa1)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111569726 (rpa1)
MMR (mismatch excision repair)
111569726 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
111569726 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
Rhabdo_glycop_CD
IBR
Motif
Other DBs
NCBI-GeneID:
111569726
NCBI-ProteinID:
XP_023127804
Ensembl:
ENSAOCG00000023376
LinkDB
All DBs
Position
7:1124382..1152978
Genome browser
AA seq
600 aa
AA seq
DB search
MTKLTEGAIEALSNGTGGSDAVLQLVNIRKIDGGSGPARFRVMMSDGQHSLSSFMLSTQL
NSMAEENVLAPNCICILRRHVTNVLKDGRRVVIILEIDVIETAKEVGGRIGDPTPYTEGQ
AKAPQSAPVSESRPPLQPQNKNEMNRGFSRDFGKKALPSMPNTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKSNIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYISKGSLKMANKQYTSVKNDYEMTLNGESSIIPCEDSCDVPMVQCDFVSIADLESRDPD
TIVDVIGVCKSVDEMTRLTTKTNREVSKRTLNLIDMSGKVVTVTLWGEEAEKFDGSGQPI
LAIKAAKLSDFGGRSLSASFNSTIMINPDIPEAYKLRGWYDKEGHAMDGQSLTEVKGGSG
GGNTNWKSLSDVKNEHLGHGDKADYYTCIATVVFLRKENCLYQACPSQDCNKKVIDQQNG
MFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESNEA
AFDEIFQQANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHKDYIKRLIGNIRKLAVH
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaactcacagagggcgcaatagaggctctgtcaaatggcaccggtggcagcgat
gcagtgcttcagctggtgaacattcgcaaaattgatggaggaagtggtccagctcgcttt
cgggtgatgatgagtgacggacagcactctctgtcgtccttcatgctgtccactcagctg
aacagcatggctgaagagaacgtactggccccaaactgcatctgcatcctcaggaggcat
gtgaccaatgtactgaaggatggacggcgagtggtcatcattttggaaattgacgtcatt
gaaactgctaaagaagttggtggtagaataggagaccctactccttacactgaaggtcag
gccaaagctccacaatcggctccagtttctgagagccgacctccactgcagccacaaaat
aaaaatgaaatgaacagaggtttcagcagagactttggaaagaaggctctaccttccatg
cccaatactccagggggcagctccaaagttgtgcccattgccagcctcaacccctaccag
tccaagtggacgatccgtgcccgtgtcaccaacaagagcaacattcgtacatggagcaac
tctcggggtgacggcaaactcttctccatggagctcgttgatgagagtggagagattcga
gtaactggttttaaccaagaggtggacaagttcttcagcctgattgaggttgggaaggtc
tactacatttctaagggctccctgaagatggccaacaagcagtacacatcagtgaagaat
gactatgagatgacactcaatggagagtcctccatcatcccctgtgaagacagctgtgat
gttcccatggtgcagtgtgactttgtctctatcgctgacttggagagcagagatccagat
accattgttgatgtgattggagtgtgcaagagtgtggatgagatgacccgcctcacaacc
aagaccaaccgtgaagtgtccaagagaacactcaatctaatagacatgtctggcaaggtg
gtgactgtcacactgtggggagaggaagcagaaaagtttgatggctctggacaacccatt
ttagccattaaggcagcgaagctttcagacttcggaggtcggtcactctccgcatccttc
aacagcaccataatgatcaacccagacatccctgaagcatacaagctcagaggctggtat
gacaaggagggccatgccatggatggacagtctctgacggaggtgaaaggtggcagcggg
ggaggaaacaccaactggaagtctctgtctgacgttaagaacgagcatctaggacacgga
gacaaggctgactactacacctgcatagctactgtcgtgtttcttcgcaaggaaaattgc
ctttatcaagcctgcccaagccaagactgcaataaaaaagtgatcgaccaacagaatggc
atgttccgctgtgagaagtgtgacaaagagtttccaaacttcaagtaccgcctcatcctt
tctgccaatattgccgattatggggacaaccagtgggtgacttgcttccaggagagtgca
gaggccattctaggccagaatgcagcttacctggggcagctcaaggaatcgaatgaagct
gccttcgatgagatcttccagcaagccaacttcaatacttttgtcttccgcaacagagtg
aagctggaaacatataatgatgagtccaggattaaggccacggtgatggatgtgaagcct
gttgaccataaggactacatcaagaggctgattgggaacataaggaaactggctgtccac
tag
DBGET
integrated database retrieval system
