Amphiprion ocellaris (clown anemonefish): 111569937
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Entry
111569937 CDS
T06018
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce00100
Steroid biosynthesis
aoce01100
Metabolic pathways
Module
aoce_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
111569937 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
aoce01006
]
111569937 (fdft1)
Enzymes [BR:
aoce01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
111569937 (fdft1)
Prenyltransferases [BR:
aoce01006
]
Terpene biosynthesis
Squalene/phytoene synthase
111569937 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Octopine_DH
GBP_C
Motif
Other DBs
NCBI-GeneID:
111569937
NCBI-ProteinID:
XP_023128167
Ensembl:
ENSAOCG00000015903
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All DBs
Position
12:complement(4416853..4432429)
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AA seq
457 aa
AA seq
DB search
MAGACCKCPVSLSVFKRSLSVAPRGCGSAPRSLLPGWRLGERGLQEAARRSSALRPAGFH
RQTAFLHLSCQESMSDSLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTV
EDDMSIPLDKKVPMLNDFHTYLYQDEWCFTESQEKDRQVLEDFPTISLEFRNLAQEYRDV
ISDICHQMGVGMAEFLEKKVGSMKEWDQYCHYVAGLVGIGLSQLFSASQLEDPEVGRDTE
LSNSMGLFLQKTNIIRDYLEDTQEGRAFWPQEAWSQFAGRLEDLAHPEKLESALSCLNLL
VTDALRHVPDVITYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQGVVKIRKGQAV
TLMMEATNMRAVQMIISQYSQEILQKVSLADPSRDKTLHILAVIREKSALSQSSLPSRTH
HLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMKGQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcttgctgcaagtgtccggtctccctgtccgtgttcaagcgctctctctcg
gtggctccgcggggctgcggctccgctcctcggtccctcctgccgggctggaggctcggg
gagcggggcctgcaggaggccgcccgacgctccagcgccctcagacccgcaggtttccac
cgacagacggcctttctgcatctctcctgccaggaatccatgagcgacagcctgcggacc
tgttacctgtacctgaaccagaccagccggagcttcgctgctgtgattcaggcgctggac
ggagagctcagacatgcagtttgtattttctacctggtgctgagggcgctggacacagtg
gaggacgacatgagcatccctctggacaagaaggtgccgatgctgaacgacttccacacc
tacctgtaccaggatgagtggtgcttcaccgagagccaggagaaagaccggcaggttctg
gaggatttccccacgatatcgctggagttcagaaacctcgctcaggaatacagagacgtc
atctcagatatctgccaccagatgggcgtgggaatggctgaattcctggagaagaaagtg
ggatccatgaaggagtgggaccagtattgtcactacgtggccggtctggtcggcatcggt
ctgtctcagctcttctctgcatcccagctggaggatcctgaagtcggacgcgacactgag
ctttcaaactctatgggcttgttcctgcagaagaccaacatcatccgggactatctggag
gacacgcaggagggacgtgccttctggccacaagaggcctggagccagtttgcgggtcgt
cttgaggacttggctcatcctgagaagctggagtcggctctgtcctgcctcaacctgctg
gtcaccgacgctctgagacacgtcccggacgtcatcacctacctgtcccgtctgcgcaac
cagagcgtcttcaatttctgtgccattccacaggtgatggcaatagctaccctgtcgacg
tgctacaacaaccccatggtgttccagggagtggtgaagatcagaaagggacaagctgtg
actctgatgatggaagccaccaacatgagggccgtgcagatgatcatcagccagtacagc
caggagattctacagaaggtctccctcgccgacccgtcgcgggacaagaccctgcacatc
ctggccgtgatccgagagaagtcggcgctgtcccagtccagcctgccctccaggactcac
cacctttctcccatgtacctgtccgctgccatgctgctagccgccctcagctggcagtac
ctcagcaccaccgcagctcaggcgcagggcaccggcgacatgaagggacagtga
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