Amphiprion ocellaris (clown anemonefish): 111570103
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Entry
111570103 CDS
T06018
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03013
Nucleocytoplasmic transport
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111570103 (upf3b)
03015 mRNA surveillance pathway
111570103 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111570103 (upf3b)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111570103 (upf3b)
mRNA cycle factors
P-body specific factors
111570103 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
111570103
NCBI-ProteinID:
XP_023128424
Ensembl:
ENSAOCG00000000706
LinkDB
All DBs
Position
13:complement(13582174..13585758)
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AA seq
457 aa
AA seq
DB search
MKEDKENTRPKERKVEIKCEDGEKTERAKEKKEAMTKIVIRRLPPSLTKEDLEEQLQPLP
EVDYLEFFSNDTSLYPHLFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTAKKRSKKKDAKCGTIAEDPDYKKFLEFYNGDEEKFTSTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEERRKRKEAEKMKRLEK
PLEKDKDHVKEEPKIKLLKKPDRCDDVDSEKPKEKPKRAEKPNKEDRSMGSADQKRRHNI
ENKEDRGRKGEDDSRKEFRERDHDRDREREKERRQKEKERIRRQDEDRRRRRERQDGENS
NRRREDEAEKEKASEKKKGENMTDSPHSERHEKPPKDSKREESGKRERLRNKDRPAIQLY
QPGARSRNRATGGGAESNSADRKPESETKKVAEKGDD
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagaaaacactcgaccgaaggagagaaaagtggagataaagtgtgaa
gatggagaaaagacagaaagagccaaagaaaagaaggaggccatgacaaagatcgtgatc
agacgattaccgccaagtctgaccaaggaggacctggaggagcagctgcaacccctccca
gaggtggactacctggaatttttctccaatgacaccagcctttaccctcacctctttgca
agggcttacatcaatttcaaaaatcaagaggacatagtgctcttcagagatcgatttgat
ggatatgtcttcatcgacaacagaggtcaggagtatccagcaattgtagaatttgcacct
tttcaaaagactgccaagaaaagaagtaagaaaaaggatgcaaaatgtggaacaattgct
gaagatcctgattacaagaagttccttgaattttacaacggagatgaagagaaattcaca
tccacaccagagaccctgttggaggagattgaggcaaagtcaaaagaacttgtagccaaa
aagacaactcctctgctggacttcctgaagaataaacagagaatccgggaggaaaagaag
gaggagagaagaaggagggaactggagcgcaagcgtctgcgtgatgaggagcgtcgtaag
tggagggaggaggagaggaggaaacgcaaagaggctgagaagatgaaaagacttgagaaa
ccgctggagaaagacaaggaccacgttaaagaagagccaaaaattaagctcctgaagaag
ccagacagatgtgatgatgttgattctgaaaagcccaaggaaaagcccaagagagcagag
aagccaaataaagaggacagatccatggggagtgctgatcagaagaggcgtcacaacatt
gaaaacaaggaggatcgagggaggaaaggcgaagacgacagtcgaaaggagttcagggag
cgtgaccacgatcgagacagagagcgggagaaggagcggcggcagaaagagaaggagcgc
atcaggcgtcaggacgaggatcggcggaggaggagagaacggcaggacggagagaactcc
aacaggaggcgagaggacgaggctgaaaaagaaaaagcctccgagaagaagaagggtgaa
aacatgacggactcccctcactctgagcggcatgagaagcctcccaaagacagcaagcgg
gaggagagtggtaaaagagagcggctacgaaataaggaccggcctgccattcagctgtac
cagccaggggcccggagccgcaaccgagccacaggaggaggagctgaatccaactctgcc
gacaggaagccagaatcagagactaagaaagtggccgagaaaggagacgactga
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