KEGG   Amphiprion ocellaris (clown anemonefish): 111570579
Entry
111570579         CDS       T06018                                 
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
  KO
K24357  collagen type XX alpha
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
SSDB
Motif
Pfam: fn3 VWA Collagen Pur_ac_phosph_N VWA_2 FN3_Tor_3rd Ig_ILCR1 Herpes_DNAp_acc
Other DBs
NCBI-GeneID: 111570579
NCBI-ProteinID: XP_023129194
LinkDB
Position
8:complement(3779846..3839324)
AA seq 1591 aa
MSPPLRGSSPSVWLMLCYLLGVLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQGYK
VRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYSLHVLVLNGTTEKLLAKRRFTMEGLR
EEEMIRSGSREQKKKTLPGGSGSGDLDDVTEALLGLPTILYPDATTTTAAETTTEPPATE
TPSQPPDEAPEKTSKEKRKRKKEKERDRSKVENKEEQGTTQGKLAEDKPRKTAFTTQPVT
GRKPFECDSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLVMPFHIGPNHIQIGLTQYSG
DPRTEWHLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRPEAGARSETPFFLV
LLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLS
KLVARLVHILCGRIEDRGITKRMEPGPTVDPALLYPSPTDLRFSELSSRSVKLHWINPAK
PVQQYRVVYHSTEGQSPQEVVLPGSESTVLLEGLSSQTLFHISIFPVYEHNVGLALRGTV
TTLPLAMPANLKVTPSSYSSLQVSWGAAPGATQYMILYSALSHGEPDDAKEEKFGADQTV
VELTELLPATDYSVTLYALYDEDPSDPVTAVATTSPLPPPVSVQFPMVTHSGLRVSWVPG
AVDVPGHRITYSTNHGSDVKQVEVKGLNSVLVQNLSSLSRYLVSVQSHYPQGLSAALTSN
VTTLKVPSPSDLRVSNFSGSDITVRWEAAADDVVSYLIKWISLSGGDLRQLRVNGGSEGA
ILEGVEDDKEYQISLSALYRDGAQSEAVATRYSTLSGGGPSSVLVSEETAVSFVVSWLPP
NAHVLQYRVSYTALTGSEAQDSTVLVPGGEKRVLLESLQPDTRYSVLVTAEYRNREGGSG
STQGKTASLRVSSVSVVRSDHSSICVSWRPVSAVDGYRLVIQSVKESVILDEKIKVMDKQ
TKQEAVDESSSSHCFTDLEPGILYRISVHSLLGSAEGTAVSILHPTATAPARLPIHPRLY
PIHNEVCPEVTIRNSIVKGFDMMEAFGLTPRAHSSVEGVAAEPFVFNTIPTYSLYRDVQL
TQSTKFIHPAGFSPEHTISIAFRLLQETPREPFALWQLTDNDFQPKMGVVIDPATKHLLY
FSLDYRGEVQELTFDQPEVHRLFYGSFHKVHLSVSQVSVSLSVDCQHVGERPARPLGNLP
TDGFEMLGKLVKTRGPNSGSAPFQLQSFEIVCNTTWASEDTCCDLPGVRDEESCPAPAYS
CTCSSDVPGAPGVPGPVGRPGPRGEKGDKGEQGQKGEVGPPGKSGFEGGLGLVGSAGPRG
ITVQGKVGPPGARGDRGDPGRPGVQGLPGPPGPKGEEGIPGPKGIRGLEGNIGVPGTTGP
RGFQGMPGYPGPIGERGPSGPVGPTGLPGNKGERGEKGEPQSMAVIYQLVTQACEQLVHK
EVLKLDMFINEISRKPAPIEEPVGPPGEPGIPGPKGPPGARGNQGNVGARGRPGRSGYPG
EQGRRGMPGEKGGAGANVQGPAGVKGFAGLPGESKLGSPGTKGDDGKAGPPGFPGPPGQQ
GEIGPPGVCDSSGGCQRAPQQTEDPYYGYQP
NT seq 4776 nt   +upstreamnt  +downstreamnt
atgtctcctcccctccgtggttcatctccatctgtctggctaatgctgtgctacctgctc
ggggtcctgctgctgtcctcaggggtccatggccaaggtcgcctcaaactgacggtcttg
tctgaagacagactgcagatgaaatggaaggaggccgacggacccgttcagggctacaag
gtccgagtgaggccgatctcagaggtgccccagccagagctgatgctgaccaccaccagg
ggccgagcaacagtggcaggactcgactccagtcaggaatattccctccatgtcctcgta
ctcaatgggacgacggagaaacttcttgcaaagagacgattcaccatggagggtctgcgt
gaggaggagatgatccgtagcggcagtcgagagcagaagaagaaaacgctgcctggaggg
tcgggatcaggagatctggacgatgtaacagaagctctgctggggctgccgacgatctta
tatccagacgccacgaccaccactgctgctgaaacgactacagagcctccagctacagaa
accccctctcaaccccctgatgaggccccagagaaaaccagcaaagagaagaggaagagg
aagaaagaaaaagagagagatcgttccaaggtggagaacaaggaggagcaggggacgact
caggggaaactggccgaggacaaaccccggaagacggcgtttactacgcagccggtcaca
ggaagaaaaccatttgagtgcgacagcgacgcagcagcagacatcatgctgctggtagac
ggttcctggagcatcggacgaaccaacttcagacgcgttcgagacttcttggagggcctg
gtgatgccttttcacatcggaccgaaccacattcagatcggtctgacccagtacagcgga
gaccctcgaacagagtggcatctcaacaacttcaccaccaaagaccagctgctggaggcg
gtgaggaacttcaggtataaaggaggaaacacatttacaggccaggctctgcttcacgtc
atggaggagaacatgaggcccgaggcgggagcgaggtccgaaacgccgttcttcctggtc
ctgctgaccgacgggaaatctcaggatgacgccatcgcagcagcaaaccgcctgaagaac
gcaggcgtggaaatcatcgcagtgggtgtgaagaacgcagacgaagctgagttgagacag
gtggcgtcggagccggtggatctgaacgtctacaacgtcaacgacttcccactgctcagc
aaactggtggcccgactggtccacatcttgtgtgggaggatcgaggaccgcggcatcaca
aaacggatggagcccggacccacagtggaccctgctctcttgtacccgagccccactgac
ctccggttctctgagctcagttccagatcagtgaagcttcactggatcaatcctgccaaa
ccagtgcagcagtacagagttgtttaccacagcactgagggtcagagtccacaggaggtt
gtgttgcctggttcagagtccactgtgctgctggaaggtctgtcctctcagacgctgttc
cacatctccatcttccctgtttatgaacacaacgttggcctggcgctcagaggaaccgtc
accacattgcctctggccatgccggccaacctgaaggtgactccgtcctcctacagttct
ctgcaggtgagctggggtgcagcaccaggagcgacacagtacatgatcctgtactcggca
ctgagccacggagaacctgacgacgccaaggaggagaaattcggagccgaccagacagtg
gtggagctgacagagttactaccagcaactgattactccgtcactctttatgcgctgtac
gatgaggatcccagcgatccagtcactgctgttgccaccacatccccccttcctcccccg
gtgagcgttcagttcccgatggtcacccacagtgggctcagggtgagctgggttcccggt
gccgtggacgtccccggacacaggatcacctacagcaccaaccacggcagcgacgtcaaa
caggtggaggtcaaaggattaaactcggtgctggtgcagaacttgtcctctctgtccaga
tatctggtttcagtccagtctcattacccacaaggcctttctgctgcgctcaccagtaac
gtcaccacattgaaggttccttctccgtcagacctcagagtgagtaacttctcaggcagc
gatatcaccgtccgctgggaggctgcagccgacgacgttgtttcttacctcatcaagtgg
atttctctgagtggaggagacctgagacagctgagggtgaacggcggcagtgaaggagcg
attctggagggagtggaggatgataaagaatatcagatatctctgtctgctctgtacaga
gatggagctcagagtgaagctgtggccactcggtatagcaccttgtctggtggaggcccg
tccagcgttctggtttctgaggagacggcggtcagcttcgtggtcagctggttgcctccc
aacgctcacgtcctccagtatcgggtctcgtacacggctctgaccggatccgaagcccag
gacagcaccgttttggttccaggtggtgagaagcgagtgttgctcgagtctttacagccg
gacacccgttacagcgtcctggtcacggccgaatatcgaaacagagaaggaggcagcggt
tcgactcagggaaaaaccgccagtctgagggtcagcagcgtgagtgtcgtcaggtcggat
cactccagcatctgtgtgtcgtggagaccagtttctgctgtggacggatatcgtctcgtc
atccagtcagttaaagaatctgtcatattggatgagaagatcaaagttatggacaagcaa
acgaagcaggaagctgtggatgagtccagcagcagccactgtttcactgatctggaacct
gggattctgtatcgcatcagcgttcattcacttctgggctcagcggagggcaccgccgtc
tccatactgcatcctacagccacagctccagccagacttcccatccatccccggctgtac
ccgatacacaacgaagtttgccctgaagtcaccatcagaaacagcatcgttaaaggcttc
gacatgatggaggcgttcggtctgactcctagagctcattcatcagtcgaaggcgtcgca
gccgaaccgttcgtcttcaacaccatcccgacctacagtctgtacagagacgtccagctc
actcagagcaccaagttcatccaccctgcaggcttctctccagaacacaccatcagcatc
gccttccgcctgctgcaggaaacacccagagaaccttttgctctctggcagctcaccgac
aacgacttccagccgaagatgggagtcgtcatcgacccggcgaccaaacatctgctgtac
ttcagtctggactacagaggggaggttcaggagctgaccttcgaccagccggaggttcac
cgcttgttctacggcagttttcacaaggttcacctgtctgtcagccaggtgagtgtttct
ctgtctgtggactgtcagcatgtgggtgagagaccggctcgtcctctggggaacctgccc
accgacggcttcgagatgttgggaaaactggtgaagacccgaggacctaacagtggatct
gcaccgtttcagctgcagtcctttgagattgtctgtaacaccacgtgggcttcagaagat
acctgctgtgacctgccaggagtgagagatgaggaaagctgcccagctccggcctacagc
tgtacctgctcctcagacgttcctggagctcctggcgtccctggacccgtcgggaggccg
ggtcctcgtggtgagaaaggcgataagggagagcaaggccaaaagggtgaagtcggtcct
ccaggaaagtctgggtttgagggaggccttggactggtgggcagcgctgggcctcgaggc
atcacggtgcagggaaaagtgggtccaccgggagcaagaggagatagaggagatcctggg
cgacctggagttcagggtttgccgggacctccaggaccaaagggggaagaggggatccca
ggccccaagggaatcaggggtctcgaagggaacatcggagtaccgggaaccaccggacct
cggggtttccaggggatgccgggatatccggggccgataggggagaggggcccttcagga
cctgttggaccgacgggtctgccagggaataaaggggaacgaggagagaagggagaacct
cagtccatggccgtgatctaccagctggtcacacaagcctgcgagcaactagtacataag
gaggtgttgaagctggacatgttcattaacgagatcagtcgtaaaccagctcccatcgag
gagccggtggggcctccaggtgaaccaggtataccaggacctaaaggcccaccgggcgcc
aggggcaaccaggggaatgttggggccagagggagacctgggaggtctggataccctgga
gaacagggaaggagagggatgccgggggagaaaggtggagcaggagccaacgtccaggga
ccagcgggggtcaaaggattcgcaggtcttccaggtgagtccaagctgggaagtccaggt
accaaaggagacgacggtaaagccggaccaccggggttccccggacctcccggccagcag
ggggagatcggaccaccaggggtttgtgacagcagtggaggctgccagagagctcctcag
cagacagaggatccttattatggctaccagccctga

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