Amphiprion ocellaris (clown anemonefish): 111570679
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Entry
111570679 CDS
T06018
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111570679 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111570679 (edc4)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111570679 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
111570679 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
DUF29
Motif
Other DBs
NCBI-GeneID:
111570679
NCBI-ProteinID:
XP_023129339
Ensembl:
ENSAOCG00000007499
LinkDB
All DBs
Position
3:complement(34811511..34861799)
Genome browser
AA seq
1390 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSADPPSSDGQRKPSFNGELNGLLGVLASTDRST
MSDTTRPLSTDVSTAQETQIIRLTGDDGSTCIPITSNNVEVVASQESSINSKARGSSKVK
IQPVAKYDWEHRYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVDSAERSLLKGFTGAVT
DLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQIVVHIRRPEDTPLNSHHRLIWCPF
ILDDNEENQDDTSQTLALLHEDRAEVWDLEVLRANSSSWPVDATDVKEGLITIKGHTQRV
SEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDNHKR
QDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSALPSLKASLDLSAEY
LILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVSHSRLRHTEVLPA
EEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNMSSGSAGFLPHSDSQD
GLAGFSDHLTDQSSDKESGSGSQTDLRKIPSLPAPSDFLSNSGAGSGAMPKLMTPDAFMT
PSASVPASPGSSASSLTIVTAISSNSDSTNRNMDDVSQSPNRADNSGSSLTLSTSTSSPR
AASAVLLPGLENLQALTSSGGPLVLDSPQVLDSPLLPPLASPTRARSPDVISSASTAMSQ
DMPEIASQTLQLQRGLVSSLEPLPLSALQTDSMASAASALHLLTSPRTANNNSLLPLELG
GADGPVGGSVESETRLSHTPSLLENALSQENPGAGGGSSDGSVSHTPWPAAPDITRETRN
SLRDNGLGECSREEAKDRHLSSPYHRRSYHLTQNDSQDAGGEQSDPDDEVASLASSSGNC
GSRSSHRIPVKDWKTSPRGSPKLKRKMKKDDSESSQSRQMDSAQFNAEVQDELLMLLRSQ
QRELAELRGQIETMQSSIMAQVEHVLTNHQEQERRRLERVLAESQNHQQQLQEHLSQQLS
HALSSALTNRMDKVLREEVKKTVPQTISKSLEPVTGQLSNTIAAKLTAVEVTLKDNVGKV
VKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTQEY
IQQLETHMKSRKQREQEARDPMIGELQQMIDGFQSSTDQLANNVTANVRAEVQHQIQMMV
ANLQESILSHVQRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANI
LQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQSPCPLSQPVLLSLIQQLSSN
LTTRSELKISYLEDALMNLDHGDPLTRDHMSSVLAQVRPKLFAFLQQDPHSPLSKRARRL
MMMLQGLVNH
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaactccaacatagacatcgagggtgcgacccagcatctccgggacatcctc
aagctcgaccgtcccgggaacagcgccgatccgccgtcaagcgatggtcagaggaagcca
tctttcaacggagagctgaacgggctactgggagtgttggcgagcaccgaccggtcgacc
atgtcggacaccaccagacccctctccacagacgtgagcaccgcccaggagactcagata
atccgcctcaccggtgacgacggctccacctgcatccccatcacctccaacaacgtggag
gtcgtggcgagccaagaatccagcatcaacagcaaggctcgaggaagcagcaaggtgaag
attcagcctgttgccaagtacgactgggagcacaggtattactacggcagactgatcgct
gtgtccaactccttcctggcctatgccatcagaggagcaaacaaccacgccatgatccgg
gtcctgagtgtggattctgccgagcgctccctgctgaaggggttcaccggcgccgtcaca
gatctggcgttcgcccacctcgactcctccctgttgggttgtgtagacgaagcaggaaac
ctgatggtctggcagctcacctgcactggcagcaaaatactagatcagattgtggttcac
atccgacggccagaagacactccactgaactcccaccatcgcctcatctggtgcccgttc
atcctggacgacaacgaagagaaccaggacgacaccagccagactttggcccttctgcat
gaagacagggctgaagtttgggatctggaggtgttgagagcaaacagcagcagttggcct
gtcgacgccacagacgtgaaagaaggcctcatcaccatcaagggacacactcagagagtc
agtgaaggtgccctgtctccagatggaaccgtgttggccacagccagccatgacggatac
atcaagttctggcagatatacatagagggagggcaggacaagcccagatgtcttcatgag
ttgcggcctcatggaggacgcccgctgtcctgccttcttttctgcgacaaccacaaaaga
caggaccccgaggttcctttctggcggttcctgataactggagctgatcagaaccaggag
ctgaagatgtggtgcaccgtttcctggacttgtttacagaccatcaggttttctccggat
ccgttcaactcatcggctctgccgagtctcaaggccagtctggacctttctgctgagtat
ctcatcctcactgatgtccagaggaaggtcctgtacgtgatggagctgcgacaggacttg
gagaaaggaaaggcgagtttcacggcggtgtcagagttcctgctgacccacccggtgctc
agcttcggggtccgagacgtcagccacagccgactgcgacacaccgaggtcctccctgct
gaggaggagagtgaaagcatgactacagaagggactcaaggacccacagagtccaagtct
ggcatccagattaagctctactgtgtccacaccaagagtttgcaggacgtccagatctgg
tttcagcccaacatgagttcaggctctgcaggcttccttccccattctgactctcaggat
ggccttgcagggttttccgaccatctcactgaccagagctctgacaaggagtcaggaagt
ggctcccagaccgacctgaggaagatcccgtcgcttcctgctccctctgacttcctgtca
aactccggagccggcagcggagcgatgcccaaactgatgaccccggacgccttcatgaca
ccgagcgcttcggtaccagcatctccaggcagcagcgccagcagtctgaccattgtgacg
gctatcagcagcaactctgactcgactaacagaaacatggacgatgtcagtcagagtcct
aacagagcagacaacagcggcagcagtttaacactctccacctccaccagcagcccaaga
gctgcttctgctgtgctgctacctggactcgagaacctgcaggctttgacatcctccggt
ggtcctctggtgctcgacagccctcaggttctggattctcccctcctgcctcctctggcc
tctccgaccagggctcgctccccagacgtcatctcctcggcctccaccgccatgtcccag
gacatgccagagatcgcgtcccagactctgcagcttcagcgtggactggtgtccagcttg
gagcccttacctctctctgccctccagacagacagcatggcctcggctgcctctgctctg
catctgttgacatctccacgaacagccaacaacaacagcctgttgccccttgagcttgga
ggtgcagatgggccagttggtggttcagtggagtccgagaccagactcagccacactccg
tctctactggaaaacgcattatcgcaggaaaacccaggggcaggaggaggctcctcggac
ggcagtgtgagccatacaccctggccagctgccccggacatcaccagggaaaccaggaac
agcctcagggacaacggtctcggagagtgctcgagagaggaggcgaaggacagacacttg
agctcgccttaccatcggcgctcgtatcacctcacacagaacgacagtcaggatgccggc
ggcgagcagagtgaccctgacgacgaggtggccagtctggcttcgtcctctggaaactgt
ggctctcgttcctctcacagaataccagtgaaggactggaagacctcgccgcgagggtca
ccgaaactgaagaggaagatgaagaaagatgacagtgaatcgtctcagtccagacaaatg
gattctgctcagtttaatgctgaagtgcaggatgagttgctgatgctgctgcgtagccag
cagagggagctggctgagctgcgtggacagatcgaaaccatgcagagctccattatggct
caggtagagcacgtcctgacaaaccaccaggaacaagagcgacgaagactagaacgagtt
ttggcagagagtcagaatcaccagcagcagctccaggagcatctcagccagcagctcagt
cacgccctcagctcggctctgaccaaccggatggacaaagtgcttcgagaggaggtcaag
aaaactgtcccacaaacgatctccaagagtctggagccagtgacgggtcagctgagcaac
acgattgctgccaaactgaccgccgtggaggtcaccctgaaggataacgtcggcaaggtg
gtcaaatcaaagaacacgacggatgcgattggacgagcagcagccgaggcgatgcagggt
ccgatccaagccgcctacaaagatgccttccagagcatcgtgctgcccgtcttcgagaga
ggctgccagtcgatgtttcaacaaatcaacgacagcttcaaacaaggaacgcaagaatac
atccagcagctggagactcacatgaagagcaggaagcagagagaacaggaggcgcgagac
ccaatgatcggggagctgcagcagatgatcgacggcttccagagctccaccgatcagttg
gccaacaacgtcacagccaacgtccgggccgaagtccagcaccagatccagatgatggtg
gcaaatttgcaggagtctattcttagccacgtccagcggatcgtcaaaggggaggtgagc
ctggcgatgaaggagcagcaggcagtggtcacctccagcatcatgcaggccatgaggtcg
gcggccggcaccccggttcccacagcccacctcgactaccagacgcagcaggccaacatc
ctgcagctgctccagcagggccagctcaaccaggctttccagcaggccttatcagcgacg
gatctgaatctggtcttgtatgtttgcgagaccatcgactcccagcaggtgtttggtcag
agcccctgtcctctcagccagccggtgctgctgtcgctcatccagcagctttcttctaac
ctcacaacccgctcggagctcaaaatcagctacctggaagacgcactgatgaacctggac
cacggcgacccgctgaccagagaccacatgtcctcggtgttggctcaggtgcgaccgaag
ctgttcgccttcctgcagcaggacccccacagtccgctcagcaagagggctcgacgcctc
atgatgatgctgcagggactcgtcaaccactag
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integrated database retrieval system
