Amphiprion ocellaris (clown anemonefish): 111570939
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Entry
111570939 CDS
T06018
Symbol
spg11
Name
(RefSeq) spatacsin isoform X2
KO
K19026
spatacsin
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111570939 (spg11)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
111570939 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
111570939
NCBI-ProteinID:
XP_023129724
Ensembl:
ENSAOCG00000020957
LinkDB
All DBs
Position
3:29926061..29966363
Genome browser
AA seq
2408 aa
AA seq
DB search
MDAAQRLENNSIEVAVITEKQQYIEVADIQKAELAPTASLLSCLGVRGQLVLWDPTDRQT
TPAQVEGCYGDFSWEEVPVHSQGANSFRLLAVGSHCDLKLLEVGRERSASVSLLYVAECP
ADCLLQIVSEQDHSVCELQSVHVLSFVAGRCCALLNCAWLLQLQWHQGEEEPQTLSCCSI
QLTDNDRLTAVPHCVCRETLFITSAAGLISVYNITDGSLLARIDLPTYLSSRLAAAELTS
SSPSSFPSSFSLIQVSPDLSTAVAVTQSHTAITVDLNHYFRIYPDHLLCAVSQSCPPLRP
QQPRDQDSLSSSSFSQGTLRSIFNSDRSWEACLSSMYNRAQHPTTSSSPSQHAGASWSSS
LPHLESHQCLPSAQTRVPPGGTIVTFSVPESSTASLLTVSEFSAMLTYTTPGNRHTTVAL
WDLKSGSVNYHQTEGDAAPVQCCGEKHHRLLLRKAGVFQVLFSVSQQDLLSRLMLFGSAA
TVDAVCHLNNWGRCSIPIHALQAGLKNRQLDTVDFYLKSKENVLNPSTTFSAAEPPAAST
LSLTESVQELCPALDLLCSSVRDSNSEVQSRQFSEQLLHITMCFVNTQIRSVLSSTFYED
SDVQSCVDILDQYVTELRSYMKRFPWSAGGDMFSSSTTPAQEEAQGDEWEQLSTEEVVHQ
SIMTNQIPRSQAVLRRRSLPEQRLLALRMEGLQQVFSCLQSRDLQTAKTLLTNMGFSVRN
QFHSICLHTDDKETRELMVETLSSQSYFPEEEMLSFMFIREMEKLGSLPAFRCSENTSSQ
RVVWMFHKEADGEVMRELVGQGRPEEEGSLWRTLRLDWVRNWDQSCQTVIHLSRRQHTEL
SSCDPSVLWHYLTVLHNHHCVVNWIQNRETSGACKWPELSSELVNNNTVCSTYMRENILD
LLARRFLFIQEELADLEQLLWRLAQGGGVMALSPPIPQYRSPLGLDLHSVFITFCLDHNF
QYLLYTYLEHYRLTPRNCPLLTTQNLSEGQPWFEMLVKIQEITRDLSDPGLIFQASLTSA
QVLLPGSQGSLSSLLLEGHSLLALAAVMFAPGGINQVIVQGERSGRSERTVDPQLLKMAL
GPHHKLKSALFSAGPRGNSPCSDISVYHLLQSLHPLDPSKLFGWQTANTLSSTETSELPH
FSSPHLVSRFALLENLDFLYFLRHGRPSFAYSTFLIQQLSGGGDIRLLLQWASQQVYRLA
LQCFNIPPVVSAVVCFCELLGVCSLKLRVDVRAMNIILQHFNQHNTHISSTLHLHTLVSK
GVKLVEGESEAAEELVAYLEAAVADSLEQRGISRSSYEAAQEWALPVQFCQLHGLNLSSV
YPTHCADDRQLIHFLLFVQLHNFPPEQVRSLVAQFEPTLQAQLSLAFQDLQVYSQRRMCD
PDELSVPLTTEVSSGSPEHPRELFQVLLRSQEKLAPCRYLLHEALVQRCPTLAILAACLQ
GTELLPCLCVWVLTSVDDVTSREATSHLVEAPQHHAWTLHDLSIIWRTLLGRGLVRPLLR
GFELLQRDCPLVLVLRMFELCCDYRNFARAKLKLLDFQRTLISLRNSGPGPSGGLPLQWV
ESQASVLLLTMLQRCSSQYDLHRLLQLLADVDKLLKSNGPDFRKLSQLSQLLQGSEVSLS
PRLLQCSPPSIQQVEFQATVDALQAKGRYSQARQVALLAGLPVHHLLLSQLLQEVTSQKT
KQQWRRLETRISFWRKCHDQLKANSTDPESASQFFLSQAEMGTADSPVGAQAQVKLLDVQ
ERCLLFVLAAHWLSLLSLIPIDKLENLEKKLWLSRVQKYILTVAIEKESVFNLPPPAVTP
EMSTYEVLMREFSFSNISDLNTEKCLSLEGLPGPSEEQEKLKIDSALSPEERSILTTLIG
QLLDEGSIHEASRVCRYFSLYHPDMSVVLRCHGLASGELDPESPEEASEAPARMSITSSS
SLSSLSSFVMLPLPEDKVAAQLQKLVDQCRHGNNYCKQVLSLYQLSKELHCSFSQICRED
PNSVLEKLLLSDHPERFRKAQAFIKAQHLSADTVAELVSSAVVQAQLACTQELQPVEKPV
YRPSHGRDSLVQLIKLCDDPNLVGLKLLENLNAVPLRDLSCIVELLIVAHDCFSLTCNME
GIVRVLQAARHLSHDYLAPGEHYSLLVRLLTGIGRYNEMTYIFDLLHQNHCFEMLLRKKV
DTERGQSSSLKTALLEYIKRCLPADSEKHNMVALCFSMRREIGENHEMAARTQLKMIESQ
AWVVTPDLKNSLVKVLGLLKDAAESFSKDSCVRQASRCVRTAKLVALQLHFLNSGSDLCI
ISLRPTELLNAVMMLPQCYQVFVVSEAYNYNPDWAEILYQKVILKGDFLYLEEFKRHRSL
TSNLFEDIFKRLDSMPSSIIPNVKRLLTHCDDVYSRYRLAYQQNLYDITKTLLQDTKTSN
YLNDRLAS
NT seq
7227 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggctcagcggctggagaataactccatagaggtggctgtgatcacagagaag
cagcaatacattgaggtagcggacattcagaaagctgaactggctcctacagcttccctg
ctcagctgtctcggcgttcggggccagcttgtgttgtgggacccgacagatagacagact
actccggctcaagtggaaggctgctacggagatttttcctgggaggaggtgcctgtccac
agtcagggagccaacagcttcagactgttggctgttggatctcactgtgacttgaagctg
ctggaggttggaagagaacgatcagcctctgtttctctgctctatgtagctgaatgtcct
gcagactgcctgctgcagattgtcagtgagcaggaccacagtgtatgtgagctacagtcg
gtgcatgtgctgtcttttgtggctggtcgctgctgtgcactgctgaactgtgcctggctt
ctgcagctgcagtggcatcagggagaggaggagccacagacgttatcctgttgcagcatc
cagctgactgacaatgacagactcactgctgtccctcactgtgtctgcagagaaaccctg
ttcatcaccagcgccgctggactcatctctgtgtacaacattactgatggcagcctattg
gccagaattgacctgccgacctacttgagttccagattggcagcggctgagctgacctcc
tcttctccctcctcctttccatcctccttctccctcatccaggtgtcacctgatctaagt
acagctgtagctgtcacccagtcccataccgccatcactgtcgaccttaaccactatttc
aggatatatccagaccacctactatgtgctgtgtcacagtcgtgcccccctcttcggcct
caacaacccagagaccaggatagcctgtccagttccagctttagtcaaggcaccctcaga
tccatcttcaattctgaccgctcctgggaagcttgtctgtcctccatgtacaacagagcc
caacatcctaccacttcctcctccccctcccagcatgctggggcctcctggtcctcctcg
ctcccccacctggagtcccaccagtgtctgccatcagctcaaaccagagtgcctcctggg
gggacaatcgtcactttttctgtccctgaatcatccactgcgtctcttctcactgtctct
gagttctctgccatgctgacctacaccactcctggcaatagacacaccacagtagcctta
tgggatttaaagtctggcagtgtgaattaccaccagacagagggtgatgcggctccggta
cagtgttgtggagagaaacatcaccgactactgctgaggaaggccggtgtgttccaggtc
ttgttctccgtgtctcagcaagacttgctcagcaggttgatgttatttggcagtgcagca
acggtggatgccgtctgccacttgaacaactggggccgctgctccatccccatccatgcc
ctgcaggctggactgaagaaccgtcagctggacacagttgatttctacctcaagagcaaa
gaaaatgtactgaacccctcaacaacgttcagtgctgctgaaccaccagcagcctccaca
ttgagcctgacggaaagtgtgcaggagttgtgtcctgcgttggacttgctatgttcctct
gtcagagattcaaacagtgaggttcagagccgacagttctcagaacagctgctacatatc
accatgtgcttcgtcaatacacagatccgctctgtgctgtccagcacattctatgaggac
tcagatgtacagagctgcgttgacattctggaccagtatgttactgagctgaggagctac
atgaagagattcccctggtctgctggaggagacatgttcagttccagtactactcctgct
caggaggaggctcagggcgatgagtgggagcagctgtcaacagaggaagtggtccatcag
tctatcatgaccaatcagatccctagatctcaggccgtcttgcggcggcggagcctgcca
gaacagcggctgttggctctgaggatggagggtctgcagcaggttttctcttgtctgcag
agcagagacctacagacagccaaaacactcctcaccaacatgggttttagtgtgaggaac
cagtttcacagtatctgcctgcacacagatgacaaggagacgcgggagctaatggtagag
acactgtcaagtcagagctactttccggaggaggagatgctgagttttatgttcatcagg
gagatggagaaacttgggtcactgccagcttttcgctgctcagaaaacacctcatcacaa
agggttgtttggatgtttcataaggaggcggatggtgaggttatgagggagctggtggga
caggggaggcctgaggaggagggcagtctctggaggactcttagactggactgggtgagg
aattgggatcagagctgccaaacagtcatccacttatccagacgccaacacacagagttg
agttcctgtgacccttcggtgttgtggcattatctgactgtcctccacaaccaccattgt
gtggtcaactggatccagaacagggaaacctctggtgcctgcaagtggccagagttatct
tcagaacttgttaataacaacacagtctgcagcacctacatgagggagaacatcctggac
ctgttggctaggagatttctgttcattcaggaagagctggctgacctggagcagctgttg
tggaggctcgctcagggtggaggagtgatggctttatcccctcccatccctcagtaccgc
tcccccctcggccttgacctccacagtgtttttatcaccttctgtctggaccacaacttt
cagtacttgctctatacctacctggagcactacagactgacacccagaaattgtcccctc
ctgaccactcagaatctatctgagggtcagccctggtttgagatgctggtgaagatccag
gagatcaccagggatctgtcagatccaggactgatcttccaggccagtttaaccagtgct
caggtgctattaccaggcagccagggatccctcagcagtctgctgttagagggacacagc
ctgctggctctggctgccgtcatgtttgcccctggaggaatcaaccaggtgatagttcag
ggcgaaaggtcaggcaggtcggaaaggacagttgaccctcagctcctgaagatggcgctg
ggcccccatcacaaactgaagtctgccttgttctctgccggtccccgaggaaacagccca
tgctccgacatctcagtttaccacctcctgcagtcactccaccctctggatccatctaag
ctgtttggatggcagacagcaaatactctcagttccaccgaaacatcagagttgcctcat
ttctccagccctcatctggtcagtaggtttgcgctgctggagaaccttgactttctgtac
ttcctccgtcatggcagaccctcttttgcgtattctaccttccttatccagcagctgagt
ggcggtggtgatatcaggctgctgttgcagtgggccagccagcaggtgtacaggttggcc
ctgcagtgttttaacatcccacctgtggtgtcggctgttgtttgtttctgtgaactgctg
ggagtctgcagcctcaagctgagagttgatgtcagagccatgaacatcattctgcaacac
ttcaatcaacacaacacgcacatctcttcaacattgcatctgcacactctggtgtctaaa
ggtgtgaagctggtggagggagagtctgaagcagcagaagagcttgttgcttacctggaa
gctgcagtggcagacagtcttgagcagaggggcatcagcagatcatcatatgaggcagct
caggagtgggcattgcctgttcagttctgccagctccacggtctgaatctcagctctgtt
taccctacccactgcgctgatgacagacagctcatccacttcttactatttgtccaactg
cacaacttcccacctgagcaggtgaggtcactggtggctcagtttgagcctaccctgcag
gcccagctgagcctggcatttcaggacctccaggtgtacagtcagaggaggatgtgtgac
cctgacgagctatcagtgccgctgacaacagaggtgtcgtccgggagcccagagcacccg
agggagctgttccaggtcctcttgcggagccaggagaagctggcaccctgcaggtacctg
ctacatgaagcactggtgcaacgctgcccaacactagctatactggctgcttgtctacag
ggaacagagcttttgccatgcctttgtgtgtgggtcctgacctcagtcgatgatgtcacc
tctcgggaagcaacctcccacctagttgaagccccccagcatcatgcatggaccctgcat
gacctgtccatcatctggaggacgcttttggggcgaggcttagtcaggccccttctacgg
ggctttgagctcctccagagggactgccctctggtgttggtgttaagaatgtttgagttg
tgttgtgactatcgaaacttcgccagagccaaattaaagctgctggacttccagaggaca
ctcatcagtctaaggaacagtggcccaggaccctcaggaggcctccccctgcagtgggtg
gagagccaggcctctgtgctgcttctcacgatgctgcagcgctgctcttcccagtatgac
ctccacaggctactgcagctcctggctgatgtcgacaaactcctaaaatcaaacggtcca
gactttaggaagctgagtcagctgagccagttgctgcaggggtcagaagtcagcctgtct
cccaggttgctgcaatgcagtcctccctccatccagcaggtggagttccaggctacagtg
gacgctctgcaagccaagggccgttacagccaagccagacaggttgctctgctagctggc
ctgcccgtccatcacctgctgcttagccagctacttcaggaagtaacctcccagaagacc
aagcaacagtggagaagattggagacgcggatcagtttctggaggaaatgtcacgatcag
ctaaaggccaacagtactgatccagaatctgcctcccagttcttcctgtcacaggctgaa
atggggactgccgactcccctgtgggtgcccaggctcaggtgaagttactggatgtccag
gagcgctgcctgctgttcgtgcttgctgctcactggctctccctactcagcctaattccc
attgataaactggagaacctggagaagaagctatggctcagccgggtccaaaaatacatc
ctcacagtcgccatagagaaggagagtgtttttaacctgccgccaccagctgtcacacct
gaaatgagcacatatgaagtgctcatgagggagttctccttctccaacatatcagacctc
aatacagagaagtgccttagtctggagggactcccaggtccctccgaggagcaggagaag
ctgaagattgactcagcattaagtccagaggagaggagcattctgacaacactgattggc
cagttattagatgaaggcagtatccatgaagccagtcgtgtctgccgttatttctctctg
taccaccccgacatgtcagtggtgctgcgctgccacggcctggcatctggagaactggac
cctgaatcacctgaagaggcatcagaggctccagcaagaatgagcattactagctcttcc
tcattgagcagcctgtcctcatttgtgatgctgcctctccctgaagataaggtcgctgcc
caactccaaaaactggtggatcaatgtcggcatggaaacaactactgcaaacaagtccta
agcctctatcagctgtccaaggagctccattgctccttcagtcagatctgcagagaggat
cctaactcagtcctggagaagctgctgctgtcagaccacccggagcgcttcaggaaggct
caggccttcatcaaagctcagcatctgtctgcagacactgtagctgagctggtctcctct
gctgtggttcaggcacagctggcctgcactcaggagctgcagcctgtggagaagccggta
tataggccgtcccatgggcgagactctctggtgcagctgatcaaactatgtgacgaccca
aacttggtgggactcaaactgttggaaaacctcaacgctgttccactcagagacctgagc
tgcattgtagaattgctgattgtggcacacgactgtttcagtcttacctgtaacatggaa
ggaattgtgagagtgctccaagccgcccgccacctcagccatgactatctggctccagga
gagcactacagcctgctggttcgtctgctgacaggcattggcaggtataatgagatgaca
tacatttttgatctgctgcatcaaaaccattgttttgagatgctgctgaggaagaaggtg
gacacagagagaggacagagctccagcctgaagactgctctgctggaatacattaagcgg
tgcctccctgcagacagtgagaaacacaacatggtggcactgtgtttcagcatgaggagg
gagataggagaaaatcacgaaatggctgccaggacgcagctgaagatgattgagtctcag
gcctgggttgtcactcctgatctgaagaattcgttggttaaggtgttgggcctgctgaag
gatgcagcagagagcttctctaaggactcttgtgtgcgtcaggccagccgttgtgtgcgg
acagctaaacttgttgctcttcagctccacttcctgaacagtggatcagatctgtgcatc
atcagcctgcgacccacagagctgctgaatgctgtcatgatgctgccgcaatgctaccag
gtttttgtggtgtcagaggcatacaactacaatccagactgggctgagattttgtaccag
aaggtcatcctgaaaggagactttctttacctggaggagttcaaacgccaccgttcactt
acctccaacctgtttgaggacattttcaaaaggctggacagcatgcccagcagcatcata
cccaacgtgaagcgactgctgactcactgtgatgatgtgtacagccgctataggctggcc
taccagcagaatctgtatgacatcaccaagacgctactacaggacaccaagacctccaat
tacctaaatgacaggcttgccagctga
DBGET
integrated database retrieval system
