Amphiprion ocellaris (clown anemonefish): 111570955
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Entry
111570955 CDS
T06018
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111570955 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111570955 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111570955 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111570955 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111570955 (col4a3)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111570955 (col4a3)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111570955 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111570955
NCBI-ProteinID:
XP_054868169
Ensembl:
ENSAOCG00000027875
LinkDB
All DBs
Position
7:complement(35173752..35216349)
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AA seq
1669 aa
AA seq
DB search
MEPPGGCRSSFVPLPLLVLLLWGSTAPGHAERVCHCSGKSLCHCDGIKGQKGEPGYLRYA
GLPGVIGYPGNEGNPGPAGEKGDRGAAGGSGLKGSRGIPGKPGFPGPPGLPGIPGHEGPI
GRPGVPGCNGTKGDVGFPGYPGPPGPPGLQGPEGLRGMKGDTFSFPIAQDVKGAAGPPGL
YGEKGLNGDPGEPGLQGSPGPAGLPGSPGLPGLPGEKGQEGPSPVIPGPRGQKGIQGPPG
IPGQKGIKLYAEGSKELKGEPGETGEKGCPGLPGLPGKPGIKGEKGGRGDPGSLGKPGKE
GFPGELGEQGDPGDRGFLGPPGIDGSPGEKGDQGPPGLPGEMVWKHRFLKGQLGVPGPGG
PPGVPGEQGLIGFPGLQGEPGVGLPGPPGPQGPPGFSGPRGDSGDPGPLVVGPPGQTGVP
GFDGAEGEPGEPGIPNFVEGEVGPTGAKGLKGLMGFPGTRGEEGPTGEKGEVCLTCPLVS
GEPGPPGDPGAPGENGLTGSDGYPGFKGQKGVKGIGGPTGLSGAFGIPGLPGSPGPAGEP
GIMQRVGQKGEDGASGEPGPQGLDGLDGRPGVPGPKGVLGPKGDPGPLGPKGDQGPLGDT
GPRGLTGQMGPSGPPGIGAPGLPGPRGNVGILGEPGEPGAPGEKGSPGEIRTSPGDPGQK
GDTGLSGNPGPEGVTGPPGPSGFIGPKGEKGDKGFSVQGPPGFPGVKGPKGLPGAPGLPS
FGIKGRAGPSGPPGMPGPKGHRGFGFPGQQGQTGPQGEDGSVGPQGNPGPPGIDGVPGLP
GQDGLPGLKGHRGLDGVTGPAGFIGTCVPGDPGPEGEPGVRGVIGFPGIRGLKGEPGYPG
LPGVGALGPQGPYGNPGFDGAPGPVGGVGPKGLRGTDGEPGSPGVRGDQGPPGPFGSPGA
DGNPGESGQPGPKGLMGVNGFRGSQGPTGLQGDRGVPGPKGTQTDVMMPGDPGDPGFPGA
KGLTGPKGERGLAGLRGRDGSDGKPGNAGPRGLPGHPGRDGARGPPGPAGLPGNPGPMGM
PGCKGEKGCFGPCGIPGSKGKPGPEGPKGPKGEPSPPGPGSKGCPGMKGSPGCPGIPGTK
GHPGHCGDLGPPGKCGPCGPKGPSGPPGCRGPPGTPGDKGCDGPPGKSGPPGPTGLTGNK
GAPGDPGPAGPRGNQGQDGIPGPPGEKGAMGAPGTGPRGPEGKKGQPGCSGEKGPPGPCG
PPGPCGLPGNPGCSGPPGPPGPAGCPGKDGVCIKGTKGDRGVPGGRGTKGPPGSFGPPGP
PGPGCKGDKGCQGPKGNPGPPGCVGDPGHRGCVGRDGIPGPPGQKGLRGPLGTKGPSGLK
GDEGPPGPCGPRGSPGPPGRTGPRGRDVTRKVELCPGEKGSPGDPGPPGRRGPPGGAGAP
GPKGSRGFDGKTGRKGQRGRPGLKGDKGDRGFPGPIGREGFRGPTGAKGLPGQPGSCETP
TRKTGFLFTKHSQELYIPQCPEGSSLLYSGYSLLFINGNNRAHGQDLGTLGSCLPRFSTM
PFLFCSTDETCRYASRNDYSYWLSTNDQLPADLPFISEESLRNHISRCSVCEARANVIAI
HSQTRFIPDCPSGWDSLWSGFSFVMETGVGAEGSGQPLASPGSCLENFRKIPFIECHGRG
TCNYYTDSYSYWLAALNPADMFSKPRPQTDRGNLPGDLISHCRVCMKLL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggagcctccgggcggctgcaggagcagctttgtgccgctaccgctgctggttctcctg
ctgtggggctccacagctccgggacacgccgaaagggtttgtcactgcagcggaaagtct
ctctgccactgtgacggcatcaaaggccaaaagggggaacctggttacctcagatacgcg
ggacttcctggtgtgattggttaccctggaaacgagggtaatccaggtccagctggagaa
aagggtgatcggggagcagccggaggttcaggactgaaaggttctcggggtattccagga
aaaccaggtttcccaggacctccaggactgccgggaattcccggacatgaaggaccaatc
ggccgaccgggagtcccaggatgcaacgggacaaagggtgacgttggtttcccagggtac
cccgggcctccaggaccacctggcctgcagggccctgaaggactacgagggatgaagggc
gacacgttcagtttccccatcgctcaggacgttaaaggagcagcaggacccccgggactg
tacggagaaaaggggctgaatggagatccaggagaaccgggtctccaaggatcaccggga
ccggccggacttcctggaagcccagggttgccggggttaccaggagagaagggtcaggaa
ggtcccagtccggtgattccaggtccacggggtcagaagggcattcaaggacctcctggg
attcccggccagaaaggaatcaaactttatgccgagggatccaaagaactgaagggagaa
ccgggagaaaccggagaaaaaggctgtccaggacttcctggtttgccgggtaaaccgggg
attaaaggggagaaggggggcagaggagatccaggttcactgggtaaaccaggaaaagag
ggattccctggagagctcggagaacagggagaccccggagatcgtgggttcctcggtcct
ccgggtatcgatgggtccccgggtgagaaaggtgatcaaggtcctccaggtcttccagga
gagatggtttggaaacacagattcctgaagggccagcttggtgttcctggacccggagga
cccccgggagtccctggagagcaaggactcatcgggtttcctggactgcagggcgaacca
ggtgtgggtcttcctggtccaccaggcccccaggggcctcctggtttttctggccccaga
ggagattcaggagacccggggccattggttgtcggccccccaggacagactggagtccca
ggatttgatggagctgaaggagaaccaggagaaccaggaatacccaattttgtggagggt
gaagttggtccaacaggagctaaaggtctgaaaggcctgatgggatttcctggaaccaga
ggggaggagggaccaacgggtgagaagggggaggtgtgtttgacctgtcctctggtttct
ggagaacccggacctccaggtgatccaggagcaccaggtgaaaacgggttgacaggatca
gatggttatccaggatttaaaggccagaaaggagtcaaaggtattggaggtccaactggt
ctgtcgggtgcctttggtatccccggcctcccaggatccccaggaccagctggtgagcct
ggtataatgcaacgggtcgggcagaagggtgaggacggagcttcgggggaaccaggacca
caaggactggacgggctagatggacgtccaggagtaccaggaccaaagggtgttcttgga
ccgaaaggagacccggggcctctggggcccaaaggggaccagggtccactgggagacact
ggcccccgaggactgacgggacagatggggccctcgggacctcctggtatcggggctcca
ggactccctggacctagaggcaacgtgggaatcctgggagaaccaggagaacctggagcc
ccaggtgaaaaaggttctccaggggaaatcagaacctctccaggtgatccaggccagaaa
ggagacactggtttatctggaaaccccggacctgaaggtgtgaccggacctccaggacct
tcaggatttattggtccaaagggagaaaaaggagataaagggttttctgtccagggccct
ccaggcttcccgggagtcaaaggaccaaagggtctgcctggagctccgggtttaccaagt
tttggcatcaagggtcgagcaggaccatcaggtccaccagggatgcctggaccaaagggg
catagaggattcggtttcccaggccagcagggtcagactggccctcagggtgaagacggc
tcggtgggaccacaaggaaacccaggacctccaggaatagacggagtaccaggactgcca
ggacaagatggtctgccaggacttaaaggtcatcgcggtctggatggggttactggtcct
gctggtttcattggaacctgtgtacctggagatcctggacctgaaggagaaccaggcgtg
aggggcgtcatcggattcccagggatccgaggcctaaagggtgagcccgggtaccctgga
ctgccgggcgttggggctctgggccctcaggggccatacgggaacccagggtttgatgga
gctccagggccagtaggaggtgtgggaccgaagggtctgagagggaccgatggggagcca
ggaagcccaggagtcagaggggaccaaggccccccaggtccatttgggagtccaggggct
gatgggaacccaggggagtccggacaaccaggaccgaaaggtctcatgggggtcaatggg
ttcagaggttctcaggggccgactggcctgcagggggaccgaggagtacccggaccgaaa
ggaacccagacagatgtcatgatgcccggagatcctggagacccgggattccctggtgct
aaaggtctcactggtcctaaaggagagaggggccttgcggggctccggggccgcgacggc
agcgatggtaaacctggaaacgccggaccacgaggacttcctggacaccccggtagagat
ggagcgagaggtcctcctggtcccgctggactccccggcaaccctggaccaatggggatg
ccaggctgtaaaggtgaaaaaggctgtttcggaccttgtgggattcctggttcaaaaggt
aaaccaggaccagaggggcctaaaggtcctaaaggagaaccgagcccacctggaccagga
tctaagggatgtccaggaatgaagggtagcccaggttgtccaggaattccgggtacaaag
ggacatccaggacactgtggagacctcggtcctccaggaaagtgtggcccctgtggcccc
aaaggaccctctggacccccaggatgcagaggacctccggggactcctggtgataaaggt
tgtgatggtcctccaggtaaaagcggacctccaggacccaccggccttacaggcaacaag
ggcgctcctggagatcctggtccagctggtcccagaggaaaccagggacaggacgggata
cctggacctcctggagagaaaggagctatgggagctcctggaactggacctcgaggacca
gaagggaagaaaggtcaaccagggtgttctggagaaaagggtccccctggtccctgtggg
cctccgggtccatgtggtctcccagggaacccaggatgctccgggcctcctggacctcct
ggtcctgctggatgtcccggcaaagacggggtctgcatcaaaggaaccaaaggagacaga
ggagttcctggagggagaggaaccaaaggtcctcctggtagttttggtcctcctggtcct
cctggtccaggctgtaaaggagataaaggatgtcaaggaccaaaaggtaacccaggacca
cctggttgcgtcggagaccccggacaccgaggctgtgtgggcagagatggaataccgggt
ccacctggacagaaaggcctgagaggaccgctcggtaccaaaggaccttctggtctgaag
ggggacgagggacctccgggaccctgcggccctcggggatccccgggaccacctggaagg
acaggaccgcgagggagggacgtgacccggaaggtggagctgtgtccaggagagaaaggc
tcacctggagatccgggaccgccaggacgaagaggaccaccagggggcgcaggggcacct
ggacctaaaggttctcgaggcttcgatggtaaaactggtagaaaaggacaacgaggtcga
cctggactgaaaggagataaaggagaccgaggattccccggaccgattggtcgggaaggt
tttcgtggtccaaccggagctaaaggacttcctggtcagccaggcagctgcgagacgcca
accaggaagaccggcttcctgttcaccaaacacagccaggaactgtacatcccacaatgc
cccgaaggatcgtcgctcctatacagcggctactcgctgctgttcatcaacgggaacaac
cgagctcatggccaggacctcggtacgttgggcagctgcctccctcggttcagcactatg
cccttcctgttctgcagcaccgatgaaacctgccgctacgcctcccgcaacgactactcc
tattggctgtccaccaacgaccagctgcccgctgacctgccattcatctccgaagagtcg
ctgaggaaccacatcagccggtgttctgtttgtgaagccagagccaacgtgatcgctatc
cacagtcagaccagatttatcccagactgtccctctggatgggactcgctctggtctgga
ttctccttcgtcatggaaaccggagtcggggctgaaggttcaggtcaaccgctggcatcg
cccggatcctgtctggaaaacttccggaagattcccttcatcgagtgtcatggcagagga
acctgcaactactacaccgactcctacagctactggctggcggccctcaaccccgccgac
atgttcagcaaaccgaggcctcagactgaccgaggaaaccttccaggagacctgatcagc
cactgtagagtctgcatgaagctgctgtaa
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integrated database retrieval system
