Amphiprion ocellaris (clown anemonefish): 111571789
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Entry
111571789 CDS
T06018
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111571789 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111571789 (cpsf2)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111571789 (cpsf2)
U7-dependent histone pre-mRNA processing factors
111571789 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
111571789
NCBI-ProteinID:
XP_023130902
Ensembl:
ENSAOCG00000014095
LinkDB
All DBs
Position
12:complement(17447201..17456800)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLTDLARVPSPKVVLCSQPDLESGFSRELFIQWCQNAKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELDEYLEKEKIKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPAAVKTKHHDLMMKGEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRLEEFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCISSIENLEIRARVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKDIKVYTPKLQETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKDEAEDSE
LAMDITADLGIDQNATAVAAQRAMKNLFGEDEKELSEESDVIPTLEPLPPHEIPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctcacagccgtgtctggagttcaggaggagtccgctctctgt
tacttgctgcaggtggatgaatttcgctttctgctggactgtgggtgggatgagaacttt
tccatggacatcatcgacgctatgaaacgatatgttcaccaggttgatgctgtgcttctc
tcccaccctgatcccatacacctgggggccctgccctatgctgtgggcaaactaggtctt
aactgcactatctatgctacaattcctgtctacaaaatgggtcagatgttcatgtatgat
ctgtatcagtctcgaaacaacagtgaagattttacactcttcacccttgatgatgtggac
tgtgcttttgataaaatccagcagctgaaatactctcagattgtcaatctgaaaggtaaa
gggcatggtctctccatcactcctcttccagccggacacatgattggaggcacaatttgg
aaaattgtgaaggacggggaggaagagatagtatacgctgtggacttcaatcataagaga
gaaattcacctcaacggctgcacgttggagagtattagtcgtccgtccttacttattaca
gactccttcaatgctgcatatgtacaaccacgtcgcaaacaaagagatgagcagctgtta
accaatgtaatggagaccctgcgcggtgacggtaatgtcctcattgctgtggatacagct
ggacgtgtgctggaactagctcagctgttggaccagatttggaggacaaaggatgcgggg
ctgggagcttaccctctagctctgctcaacaatgtcagctacaatgtggtggagttctcc
aagtcccaggtggagtggatgagtgacaagctcatgaggtgttttgaggacaagagaaac
aacccctttcagttccgacacttgaccctgtgccacagtctgacagacctggcccgggtg
cccagcccaaaggtggtactttgcagccagccagacctcgagtctggtttttccagagag
ctttttatccagtggtgccaaaacgctaaaaactccattattctgacctaccgcactaca
cctggaaccttggcccgctacctcattgacaaccctggagagaagatgctggatctggag
gtgaggaaaagagtgaagcttgaaggcaaggagctggacgaataccttgaaaaggagaaa
ataaagaaagaagcagctaaaaaacttgaacaggcaaaagaggtcgatgtggactccagt
gatgagagtgatatggacgatgaccttgatcagccagctgcagtgaagaccaaacatcac
gacttaatgatgaagggcgaaggaagccgtaaaggcagtttcttcaaacaggctaaaaag
tcttatccaatgttccccacacatgaggagagaatcaaatgggacgagtatggagaaatc
atcaggttagaggaatttctggttcctgaactccaagccacagaggaggagaagagcaaa
ttggaatctgggttgactaatggagatgaaccaatggaccaggatctctctgttgttccc
accaaatgcatttcaagtatagagaatcttgaaatcagagcaagggtaacgtatatagac
tatgaaggtcgctctgatggcgactccataaagaagattattaatcagatgaaacccaga
cagctggtgattgttcatgggccaccagaagccagtttggacctggccgagtcctgcaag
gctttcagcaaagacatcaaagtgtacacacccaaactgcaggaaactattgatgccacc
agtgaaacacacatctatcaggtgcggctgaaagattccttggtgagctctctgcagttc
tgcaaggccaaagacacagagctagcatggatcgatggtgtgctggacatgcgtgtagtg
aaggtggataccggtgtgatgctggaggagggtgtgaaagacgaagcagaagacagtgag
ctagccatggacatcacggccgatcttggcatagaccagaatgccacagctgtggcagca
cagcgtgccatgaagaacctgtttggagaggatgagaaggagctgtctgaagagagcgat
gtgattcccacactggagccactgcctccacatgaaattcctgggcatcagtcggtgttc
atcaacgagcctcgtctgtctgacttcaagcaggtgctgctgagagagggcatccaggct
gagtttgtgggaggagtgctggtatgcaacaacatggttgccgtccgcaggacggaggct
ggacgcattggcctggaaggctgcctatgtgacgactactataagatccgggagctgctg
tatcagcagtatgctgtagtatag
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integrated database retrieval system
