Amphiprion ocellaris (clown anemonefish): 111572556
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Entry
111572556 CDS
T06018
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03030
DNA replication
aoce03410
Base excision repair
aoce03420
Nucleotide excision repair
aoce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111572556 (rfc5)
03410 Base excision repair
111572556 (rfc5)
03420 Nucleotide excision repair
111572556 (rfc5)
03430 Mismatch repair
111572556 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoce03032
]
111572556 (rfc5)
03036 Chromosome and associated proteins [BR:
aoce03036
]
111572556 (rfc5)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111572556 (rfc5)
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111572556 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
111572556 (rfc5)
Chromosome and associated proteins [BR:
aoce03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111572556 (rfc5)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111572556 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
111572556 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
AAA_24
AAA_14
RuvB_N
AAA_16
DEAD
AAA_assoc_2
ResIII
DUF815
PhoH
AAA_7
AAA_5
AAA_30
AAA_19
ATPase_2
TIP49
DNAX_ATPase_lid
AAA_2
nSTAND3
Mg_chelatase
Thioredoxin_6
AAA_25
Glyco_hydro_57
DUF4119
Motif
Other DBs
NCBI-GeneID:
111572556
NCBI-ProteinID:
XP_023132036
Ensembl:
ENSAOCG00000008997
LinkDB
All DBs
Position
6:complement(36311179..36317592)
Genome browser
AA seq
335 aa
AA seq
DB search
MASTSKVPAQSRNLPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL
EHVIQQESIDISPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRSD
IANILDWCLNKDFTTAYNLILQLKSLKGLALHDILTEVHLLIHRVDFPPNIRMVLLIKLA
DIEHRLASGTNEKIQLSSMVAAFQAVRDLVVSEAS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgacgagtaaagtaccggcacagagcagaaacttaccgtgggttgaaaaatac
agaccacagacacttgatgatttgatctcccacaaagatattctaagcaccatccagagg
tttatcagcgaggacaagcttccccatctgttgttctacggccccccaggaacaggaaaa
acctccaccatcctcgcctgtgcccggcagctgtacaaggacaaagagttcaactccatg
gtgttggagctaaacgcatccgatgaccgaggtattgacgttgtacgaggtcccattctg
agttttgccagcaccaggaccatcttcaagaagggcttcaagttggtgatactggacgag
gccgatgccatgacccaggatgcccagaatgcattgcgacgagtgattgagaagttcaca
gaaaacactcgattctgtctcatctgtaactacctgtccaagatcatcccggccctccag
tctcgctgcaccaggttccgattcggcccgctgtccccggaccagatgatccctcggctg
gagcacgttatccagcaggagagcattgacataagtccagatggaatgaaggccattgtg
actttatcatcaggtgatatgagaagatcactcaacatattgcagagcaccagtatggcg
tacgggaaggtgacagaggacacagtctacacctgcacaggtcatcccctccgctcagac
atcgcaaacatcctcgactggtgcctcaacaaagacttcaccacagcgtacaacctaatc
cttcagttgaagagtctgaaaggtttggctctgcatgatatcctcactgaggttcatctg
ctcatacacagagtggactttcctcccaatattcgaatggttctgctcatcaagttagcc
gacatagagcaccggcttgcgtcaggaaccaatgagaagatccagctgagctccatggtt
gcagctttccaggcagtgagagacctcgtggtcagcgaggcttcgtag
DBGET
integrated database retrieval system
