Amphiprion ocellaris (clown anemonefish): 111572759
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Entry
111572759 CDS
T06018
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04382
Cornified envelope formation
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04518
Integrin signaling
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111572759
04518 Integrin signaling
111572759
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111572759
09142 Cell motility
04820 Cytoskeleton in muscle cells
111572759
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111572759
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111572759
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111572759
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111572759
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111572759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111572759
NCBI-ProteinID:
XP_023132330
Ensembl:
ENSAOCG00000028565
LinkDB
All DBs
Position
10:16233708..16262022
Genome browser
AA seq
1674 aa
AA seq
DB search
MGRLMFVAPLILFAVMLMATEGKNCACNGKSRCLCEGEKGSRGDKGFPGETGPPGVAGRP
GSDGHRGLMGPKGSTGPDGPPGSKGDPGLEGKEGFAGSHGLPGVPGLQGPPGPPGAPGCN
GTDGDAGLPGPPGNYGLDGNPGPPGLPGPKGESFILTHSQRGPPGLPGRDGSPGDPGFPG
GQGPQGNPGSRGSVGYPGPTGARGVKGQEGTSGIPGPRGPKGTEGPRGPPGPPGRVREYL
TESLGVLKGVKGQQGDFGDKGCKGEPGDAGFSISAKGTKGDKGLQGPEGKLGKDGDSGQH
GVRGRPGPKGDSGYPGAPGPLGEKGNRGPPGPPGNIYGPVTQPLKGYQGDPGSPGQPGVP
GRQGVVGFPGPHGPPGYGSGTSVPGPRGPNGLPGPKGDPGEPGDIYPGRPGLEGDPGDQG
PPGDPGPPGPPEDRTNRITKGLPGMKGMRGVPGPVGYDGTFGMKGEKGEPCYECEGSGPP
GPPGPRGVPGSPGYNGGPGNKGDPGFPGPRGSPGSHGPTGEPGFSGPPGPKGDSYSYNTP
GIKGEKGEPGQPGRRGPDGIPGSPGLPGRKGNQGLPGDSYPYLGAVGDRGFPGQPGLPGS
LGPVGYPGPGGYGPDGFTGSKGDAGVPGLPGQPGFPGQKGEPGHIHIRGLPGPPGIKGRP
GSPGGPGYQGAPGSPGSPGVPGQKGETGSVSVPGQPGLPGRKGEKGHPGVPGPPVRGFPG
QPGAQGPPGPPGQKGEGGLGYSGPPGPQGRPGEDGDPGPVGNPGFTGQPGNPGPGGNPGF
QGDKGRKGLVGPPGLPGSKDLCESLPGHQGPPGPDGYPGPPGVNGLPGEKGNVGSPGFGR
PGAPGEPGVPGPSVPGPSGPPGPTGIKGLTGVPGQPGLRGDPGPDGLSGYGPEGLPGSRG
APGQIGDSGRQGARGPPGFPGTKGVPGPRGPQGYPSPPQNFTGSPGESGVPGYPGLAGPD
GEPGYNGPKGQRGKQGLPGSPGQRGPPGIPGIDGSEVLPGNPGPPGPPGDHGPRGPPGYK
GLKGDPGLPGGPGPNGAPGLPGYRGPVGEPNYHGYGPPGPIGRKGEPGLINTFVMKGHKG
ESGIGGSLGLPGNRGAKGNPGSIGANGSPGNQGPKGSDGPPGGKGRRGPIGSAGNPGPPG
GIGYPGSKGNQGNDGIPGPPGQKGDTVVIPGMPGRRGVPGPPGPPGVPGLPGLPSTGTPG
PTGDRGRPGPPGNMGPRGPPGSDGLCVSGSKGDRGRPGGPGSRGYPGPRGPPGPTVPGLK
GDRGDPGFSGSPGYNGQPGDSGPEGPPGPRGRRGGPGPRGDSGPPGYQGPYGDKGDPGYI
PGSPGFPGAKGFPGRPGLKGEPAIGRAIYEPGPPGIPGPPGNRGPPGSTGPSGPSGPPGP
PGVKGRQGSSPPGQPGFTGRKGEKGRAGLQGPEGRPGSPGVKGPRGLPGRGGLGYVDSFM
IVRHSQSIRVPDCPYGTSLLYSGYSFLFINGNERAHGQDLGTTGSCLPRFTTMPFLFCDT
ESTCRFASRNDYSYWLSTDTLMPADMVSITGDRLASYISRCSVCETTSNVIAIHSQTTVI
PQCPRSWESLWTGYSFVMQTGAGAEGSSQPLVSPGSCLEYFRQVPFIECHGRGTCNYYPD
SYSYWLASLDPNNMFSKPVPQTVKGPSLQSVISRCRVCRKPQQYNTGERRGDTF
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggctgatgtttgtagctcctctgatcctatttgctgtgatgctgatggcgact
gagggaaaaaattgtgcatgcaatgggaaatcgagatgtctctgtgaaggagaaaaaggc
agcaggggagacaaaggttttccaggagagacaggtcctccgggggttgcaggccgtcca
ggatcagacggtcaccgtgggctgatgggaccaaagggcagcactgggcctgatggacct
ccgggatcaaaaggagatccgggacttgaaggcaaagagggatttgctgggtctcatggc
ttaccgggtgtcccaggcttacaagggcctccagggcctccaggggccccaggctgcaat
ggaacagatggagatgctggacttcctggtcctcctgggaattatggtcttgatgggaat
ccaggtccaccaggtctgcctggacctaagggtgaatctttcatattaacccattcacaa
cgtgggcctcctgggctgcctggaagagatggaagcccgggagatccaggtttccctgga
gggcaagggccacaagggaaccctggatcaagggggtctgttgggtatcctggtcccaca
ggggctcgaggagttaagggtcaagaaggcacaagtggtatcccaggacctcgaggacca
aagggcacagagggaccccgaggcccaccagggccacctggtcgggttagagaatacctg
acagagagcctcggtgtgttgaagggggtaaagggacaacaaggtgattttggagataaa
ggctgcaagggtgaaccaggagatgctggctttagcatttctgcaaaagggacaaaggga
gacaaaggactgcagggtccagaaggaaagctcgggaaggatggcgactctggacaacat
ggagttaggggaaggcctggacccaaaggtgattcgggatatccaggggcaccaggacca
ctgggtgaaaaaggaaacagaggtccacctggtccacctggaaatatatatggccctgtg
acacagccacttaaaggataccagggtgatcctggttctccaggccaacctggggtccct
gggcgtcaaggcgttgtgggattccctggacctcatggacctccaggctatggatctggg
acttctgtaccaggccctcgtggtcccaatggattgccaggccccaaaggagaccctgga
gagcctggagacatttatccaggacgaccaggtctagaaggggatcctggtgaccaaggg
cctcctggtgatccaggcccacctggacctcctgaagacagaactaacaggattaccaag
ggtctcccaggcatgaagggaatgaggggtgtacctggacctgttggatatgatggaaca
tttggaatgaaaggagagaagggggagccttgttatgaatgtgaaggatcaggacctcca
ggacctccgggtccccgtggtgtgcctggcagtcctggctataatggaggaccaggtaac
aaaggcgatccagggttcccaggacctcgaggttcacctggaagtcatggtcccactggt
gaaccaggattttctggccctccaggaccaaagggagactcatattcctacaacactcct
gggataaagggtgaaaaaggagagccaggacagcctggccggcggggtccagatggcatc
cctgggtctcctggattaccaggtcgcaaaggcaatcaaggacttccaggagattcatat
ccctaccttggtgctgttggagaccgtgggttcccaggccagccagggcttccaggcagc
ctaggaccagttggctaccctgggccaggaggttatgggcctgatggatttacaggaagt
aagggagatgctggggtacctggcctgccaggacagccaggatttccaggccaaaagggg
gaacctggccacatccacatcagaggacttcctggaccacctggaattaaaggacggcct
ggttcaccaggaggcccaggttatcaaggggcaccaggttccccaggatcaccaggtgtt
ccaggacagaaaggggaaacaggcagtgtgtcagttcctggacagccggggttaccagga
aggaaaggtgaaaaggggcatccaggagtcccaggtcctccagtcaggggctttccaggt
cagccaggtgcacaaggtcctcctggtcctccaggacagaagggtgagggtggccttggt
tattctggccctccaggcccccaagggcgtccaggtgaagatggagatcctgggccagtt
ggtaatcctgggttcactggtcaacctggaaatccaggaccaggagggaatccagggttt
caaggagataaaggaagaaaaggccttgtaggtcctccaggactgcctggtagcaaagat
ttatgtgaaagtttacctggacatcaaggaccaccaggaccagatggttatccaggacct
cccggagttaatggtttgccaggtgagaagggaaatgtaggttcacctgggtttggtcgt
cctggagctcctggtgagcctggtgtccctggaccatcagtgccgggtccaagtgggcct
cctggaccaacagggattaaaggactaactggtgtgcctggccaaccaggactgagaggg
gaccccggaccagacggactatcaggatatggaccagaagggttgcctggaagtagaggg
gcaccaggtcaaataggtgactctggccgacaaggagccagaggtcctccaggttttcca
ggcacgaaaggagtaccaggccccagaggtcctcaagggtacccatcaccaccacaaaac
tttactggaagcccaggcgaaagtggtgtaccaggttaccctggtctagctggtcccgat
ggagagccaggatacaatggaccaaaagggcagcgaggaaaacagggactaccagggagt
cctggacaaagaggtcctccaggtattccaggtattgatggatcagaggtcttaccagga
aatccaggacctcctggaccccctggagatcatggaccaagaggccctccagggtacaag
ggacttaaaggagatccaggactccctggaggaccaggacctaatggtgctccagggtta
cctggttacagaggacctgttggagaaccaaactaccatggctatggcccacctgggcca
ataggacgaaagggtgaaccaggattaattaacacttttgtgatgaagggacacaaagga
gaatctggtattggaggttcactaggtctaccaggaaatcgcggagccaaaggaaaccca
ggatccattggagcaaatggttccccaggcaatcaagggccaaaaggttcagatggccct
ccagggggcaaaggacgacgagggcctattggatcagcaggtaacccgggtccaccaggt
ggcattggttatccaggttctaaaggcaaccagggtaatgatgggatccctgggccaccg
gggcagaaaggagacactgtcgtaataccagggatgccagggaggcgcggtgtcccaggt
ccaccaggtcctccaggggtgcctggtcttcctggcctcccttctacaggtacccctgga
ccaacaggggacaggggacgtccaggtccacctggtaatatgggtccaagaggaccaccg
ggatcagatgggctatgtgtttctgggtctaaaggagatcgtggtcgtcctggcggccct
ggaagcagaggctatcccggcccacgtggccctccaggtcccacagtccctgggttaaaa
ggagacagaggggatccagggttttcagggagtccaggttataatggacaacctggagat
tcaggccctgaagggccgccaggtccaagaggcagacgtggaggccctggaccaagaggt
gattctggtcctcctggataccaagggccctatggagacaaaggagaccctggatacatc
ccaggttcacctggttttcctggagccaaaggttttcctggacgaccaggtcttaaaggt
gaaccagcaattggcagagcgatatacgaaccagggcctcctggtatacctggtccccca
ggcaatcgaggacccccagggagcactggtccatcaggaccatcggggcccccaggcccg
ccaggtgtcaaaggaaggcagggttccagcccacctggccagcctggatttactggacgc
aaaggagagaaaggaagagcgggactgcaaggtccagaaggcagacctggaagcccagga
gtcaagggtccaagaggtttgcccggcagagggggtttaggttatgtggacagtttcatg
attgtcagacacagccagagtatccgggtccccgactgcccttatggcaccagccttctg
tacagtggttactccttcctcttcatcaacggaaatgagagagctcatggtcaggacctt
ggcaccacagggagctgtctgcctcgcttcaccaccatgcccttcctgttctgtgataca
gaaagtacctgccgctttgcttctcgtaatgactattcatactggttgtccactgacaca
cttatgcctgcagacatggtttctatcacaggggacaggctggcttcctacattagcagg
tgttcagtgtgtgaaaccacctccaatgtcatcgccatccacagccagacaactgtaata
ccacagtgtcccagaagctgggaatccctatggactggatactcgtttgtcatgcaaaca
ggtgcaggagcagaaggatcctcccagcccctggtttctcctggctcatgtctggaatat
ttccgccaagtgccctttatcgagtgtcacggcaggggaacgtgtaactactaccctgat
tcctatagctactggctggcctccctcgacccgaacaacatgttcagtaaaccggttcct
cagacagtgaagggaccttctctacaaagtgtcatcagccgatgtcgggtctgcaggaaa
ccacagcaatacaacactggtgaaagacgtggggacactttttaa
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integrated database retrieval system
