Amphiprion ocellaris (clown anemonefish): 111572865
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Entry
111572865 CDS
T06018
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111572865 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111572865 (smarcc1a)
03036 Chromosome and associated proteins [BR:
aoce03036
]
111572865 (smarcc1a)
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111572865 (smarcc1a)
Chromosome and associated proteins [BR:
aoce03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111572865 (smarcc1a)
PBAF complex
111572865 (smarcc1a)
GBAF(ncBAF) complex
111572865 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
111572865
NCBI-ProteinID:
XP_023132488
Ensembl:
ENSAOCG00000013867
UniProt:
A0AAQ5YL22
LinkDB
All DBs
Position
9:15777178..15805662
Genome browser
AA seq
1130 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVVGGTAVGRKKDGGPSTKFWESSETISQLETVRLWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSSDIEQKQASK
LKDIIKRHQGSITEDKSKATHHIYPSPSQQEEEEWLRPVMRKDKQVLVHWGLYPDSYDTW
VSASEVDGDLEDPPNTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDLDDSSAGASMEEGSMSKNANSKKDSENTPVKGGNDLDDMEDDSVLSGGKDDE
EQGKGEINRLMDASEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSKTP
EIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAESR
PLPMGPPPTPHFTVLADTPSGLIPLNHRPPPIPPPQPMPNFADKGKDKPIDLQNFGLRPD
LYKKNIKGKAVNTTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDPYLESTETTLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVR
EEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETTEPEKMDTDSD
SQQADKAELKDEAEKPSESAEKSDKTEATEKVKKEGAETSEREEENEEGGEAKTAPADKD
KEEAMETSSSEQEKDKEEKAATEEGEDKRKKLEHDIGEGNIATAAAAALASAATKAKHLA
AVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHME
QLRYAEMKARQQMEQQAAAAAAAAAQAQGQGQAPGSGPQSGPPPPGMHPGGPPPHHGGPP
HHGAPPTHHGGPPPGAAMHPGYPPMGHHPMAPHHPGQTGPMGPGQPMPGRMMSGPPSAGP
PPGGMPPMMPPRHPGAPNGMYPGPPPAQPEAMPVAPVGPPAPQSGRVADN
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcaggcggaccggccaccggccca
gtcgtcggtggtaccgcagtgggacgaaagaaagacggcggtccgtctacgaaattctgg
gaaagttcagagacgatatcccagctggagacggtgcggctatggatcggaaagcactac
aagaagtatgtccagaatgactccccctcaagtaagtctttggcgggcttggtggttcag
ctgctgcaattccaggaggatgcttttgggcgcagggtcaataatcctgctctcaccaag
ctccctgccaagtgtttcttggatttcaaggcaggaggggctctatgtcacatcttaggg
tctgtgtacaagtttaagagcgaacagggctggcgtagatttgacctgcagaatccctcg
cggatggacagaaatgtggagatgttcttaaatgtcgagaagaacttggtccagaataac
tgcttaactcgacccactgtgttcctgtcatcggacatcgagcagaaacaggccagtaaa
ctcaaagacatcatcaaaaggcaccagggctctatcactgaagataagtcaaaggccacc
caccacatttacccctctccatcgcagcaagaagaagaggagtggctgcgtcctgtcatg
aggaaagacaaacaggtgcttgtgcactggggtctctacccagacagctatgacacctgg
gtgtcagccagcgaggtcgacggtgacctggaagacccaccgaacactgacagaccctgg
aaggtccatgccaagtgggttttagacacggatgctttcaatgagtggatgaatgaggaa
gactatgaggtagatgagaacaagaaaccagtaagcttccgccagaggatcttccccaag
gaggaagagtcttcccgtacacccgatcgaaaggagcgcaaggccaattctgccggcaag
aagaggaggcgctccccctcgccacccagcactcctgctgagtcccggaagaagggaggc
aagaaggggaacccagggcctcactggaagcgacgaggccacagaggcgaagaggaggac
actgaggaggacatgaccaaggacttggacgactcctcagctggtgccagcatggaggag
ggcagcatgtccaagaatgcaaattcaaagaaagacagcgagaatactccggtcaaagga
gggaatgacttggatgacatggaagatgattctgtgctctctggtggaaaggatgatgag
gaacaaggcaaaggtgaaattaacagactgatggatgccagtgaggacaatgtgactgaa
cagactcaccacatcatcatccccagctatgccgcatggtttgactacaactgcattcat
gagattgagagaagagccctgcctgagttcttcaatggaaagaacaagtctaaaactcca
gaaatatatctggcctaccgtaacttcatgatcgacacatatcggttaaacccacaggag
tacctcacctccacctcttgccgcaggaaccttactggggatgtctgtgccatcatgagg
gttcatgcattccttgagcagtggggtttggtgaactaccaggttgatgctgagagtcgc
ccgttgcccatgggtcccccacctacaccacacttcactgtactggctgacacgccttct
ggtcttatacccctcaaccaccgacccccaccgattcctcctccacagccgatgcccaac
ttcgcagacaaaggcaaagacaagcctatcgacctgcagaacttcggccttcgccccgac
ctctacaagaaaaacatcaagggtaaagcagtcaacaccaccagggagtggaccgagcag
gagactctactgctgctggaggccctagagatgtacaaagacgactggaacaaagtgtca
gaacatgtaggttcacgtacccaagacgagtgtatcctgcacttcttgcggctccccatt
gaagatccgtacctggagagcactgagacaaccctgggccctctggcctaccagcccata
cccttcagccagtctggaaaccctgtcatgagcacagtagccttcttggcttctgtagtc
gaccccagagtggcatctgctgctgccaaggcagcactagaggaattttctcgtgtgcgt
gaggaggtgccagctgagttggtggaggctcatgtgaagaaggtgcaggaagctgccagg
agtactggcaaggtggaccccgcctttggcctggagagcagtggcatcgctggaactgcc
cctgaggagccagaaaagactgaaactacagaaccagaaaagatggacacagactcagac
tcccagcaggcggataaggctgagttgaaggatgaggcagaaaagcccagtgagtctgca
gagaaaagcgacaagacagaggcaacagaaaaggtgaagaaggagggagcagagacatca
gaacgtgaggaggagaatgaagagggaggggaggccaaaacagctccagcagacaaggac
aaggaggaggctatggagacgtcaagttcagagcaggagaaagataaggaggagaaggca
gctacagaggagggagaggacaagaggaagaagctggaacatgacattggcgagggaaat
attgccactgcagctgctgctgccctggcatctgctgccaccaaggccaagcacttagcg
gcagtggaggagagaaagatcaagtccctggttgctctgctggtggagacacagatgaag
aagctggagatcaagctgagacacttcgaagagctggagaccatcatggatcgcgaaaaa
gaggcgttggagcttcagaggcagcagctactcaccgagcgtcaggcgttccacatggag
cagctcagatacgcagagatgaaggcgaggcagcagatggagcagcaagccgctgctgca
gctgctgccgctgcccaggcccaaggacagggacaggcgcctggatctggaccccaatct
gggccccctcctccaggaatgcaccctgggggacccccaccacaccatggaggacctccc
caccatggagcaccaccaacacaccacggaggaccccctcccggcgctgcaatgcaccct
ggttaccccccaatgggtcaccaccccatggcccctcaccacccagggcagactgggccg
atgggaccaggccagccaatgccgggacgtatgatgtccggtccaccctctgctggcccc
cctcctggtggcatgcctcccatgatgcccccacgccacccaggagctcccaatggcatg
taccctggcccaccacctgcacagcctgaagcgatgcctgtggctcccgtgggtcctcca
gcgcctcagagtggacgagtggctgacaactaa
DBGET
integrated database retrieval system
