KEGG   Amphiprion ocellaris (clown anemonefish): 111573562
Entry
111573562         CDS       T06018                                 
Symbol
polr2d
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03020  RNA polymerase
aoce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aoce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111573562 (polr2d)
  09124 Replication and repair
   03420 Nucleotide excision repair
    111573562 (polr2d)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aoce03021]
    111573562 (polr2d)
   03400 DNA repair and recombination proteins [BR:aoce03400]
    111573562 (polr2d)
Transcription machinery [BR:aoce03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111573562 (polr2d)
DNA repair and recombination proteins [BR:aoce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111573562 (polr2d)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4
Other DBs
NCBI-GeneID: 111573562
NCBI-ProteinID: XP_023133557
Ensembl: ENSAOCG00000007295
LinkDB
Position
7:complement(34610562..34614171)
AA seq 144 aa
MAAGSGAAPPHVGDVEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELS
EVFMKTLNYTARFSRFKNRETITAVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSL
EGRFEDEELQQILDDIQTKRSFQY
NT seq 435 nt   +upstreamnt  +downstreamnt
atggcggctggaagcggcgcggctcctccgcatgtcggtgatgttgaagaagacgcttct
cagctgctgttccctaaagagttcgagaacgccgagacgctactgaactcagaggtccac
atgttgcttgaacacaggaagcagcagaacgagagcgctgaggacgagcaggaactgtcc
gaggtcttcatgaagacgctcaactacacggctcggttcagccgcttcaagaaccgcgag
accatcacggccgtgcgaagtctcctcctgcagaagaagctccataagttcgagttggcc
agtttggccaatctttgtcctgaagctgctgaagaggccaaagctctgatccccagtctg
gagggtcggtttgaggacgaggagctgcagcagattctggacgacatccagaccaagaga
agtttccagtactga

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