KEGG   Amphiprion ocellaris (clown anemonefish): 111573615
Entry
111573615         CDS       T06018                                 
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03020  RNA polymerase
aoce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aoce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111573615 (polr2b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    111573615 (polr2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aoce03021]
    111573615 (polr2b)
   03400 DNA repair and recombination proteins [BR:aoce03400]
    111573615 (polr2b)
Enzymes [BR:aoce01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111573615 (polr2b)
Transcription machinery [BR:aoce03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     111573615 (polr2b)
DNA repair and recombination proteins [BR:aoce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111573615 (polr2b)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 DUF5817
Other DBs
NCBI-GeneID: 111573615
NCBI-ProteinID: XP_023133626
Ensembl: ENSAOCG00000005752
LinkDB
Position
13:1565114..1577240
AA seq 1174 aa
MYDQDEDNQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtacgaccaggacgaagataatcagtatgatgaggacgaggatgaaatcactccagat
ctgtggcaggaagcctgctggatcgtcatcagctcttattttgacgagaagggtctggtg
cggcagcagctggattcgttcgatgagttcatccagatgtcggtccagaggattgtggag
gacgctccgcccatcgacctgcaggctgaagctcagcacacatctggggaggtggaggaa
ccgcctcgatacctgctgaagtttgagcagatctacctctccaagcccactcactgggag
agagacggagctccgtctccaatgatgcccaatgaagctcgactacgaaacctcacgtat
tcggcccccctgtacgttgacatcactaagaccatcataaaggagggggaggaccagctg
cagactcaacaccagaagaccttcatcggtaaaattcccatcatgcttcgctccacctac
tgcctgctgagcggcctaacggacagagacctgtgtgagctgaacgagtgtccactggat
cctggaggttatttcatcatcaacggctccgagaaggtgctgattgctcaggagaagatg
gccaccaacaccgtgtacgtctttgccaagaaggactcaaagtacgcctacacagccgag
tgccggtcctgtctggagaactcatctcgtcccaccagcaccatctgggtcagcatgatg
gccagaggaggacagggagtgaagaagagcgccatcggtcaaaggatcgtctctacgctg
ccctacatcagacaggaggttcccatcatcatcgtgttccgagctctgggcttcgtgtcc
gacagagacattctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtgaagccgtctctggatgaagcgtttgtgatccaggagcagaacgtggcgctgaacttc
atcggttccagaggagccaaacctggagtgacgaaggagcgacgaatcaaatacgccaaa
gaagttctgcagaaagagatgctgccccatgtgggagtcagcgacttctgtgagaccaag
aaggcttacttcttagggtacatggtccacaggttgctgctcgctgctctgggacgccga
gagctggacgacagagatcactacggcaacaagaggctggacctcgctgggccgctattg
gccttcctgttcaggggcatgtttaagaacctgctgaaggagatcaggatttatgctcag
aagttcattgacagaggaaaagacttcaacctggagctcgctatcaaaactcgaatcatc
tcagacggacttaaatactcactggctactggaaactggggcgacgtcaagaaagctcac
caggcccgagccggagtgtctcaggtgttgaatcgtctgacctttgcatccactctgtct
catcttcgccgagtcaactctcccatcggcagagacggaaaactggccaaaccccgacag
ctgcacaacacgctgtggggaatggtgtgtcctgctgagacacctgagggtcatgctgtg
ggtctggtgaagaacctggccctcatggcctacatctctgtgggttcacagccgtctccc
atcctggagtttctggaggagtggagtatggagaacctggaggagatttcaccagctgcc
atcgctgatgccactaaaatctttgtgaacggctgctgggtcggaatccacaaagatcca
gagcagctgatgaacacactgaggaaactccgcagacagatggacatcatcgtgtctgag
gtgtccatgatcagagacattcgagaacgtgagatcagaatttacactgacgctggacga
atctgtcgaccgctgctgatcgtagagaaacagaaactgctgctgaagagacgccacatc
gaccagctgaaggagagagagtacaacaactacagctggcaggacctggtggccagcggc
gtggtggagtacatcgacaccttggaggaggagaccgtcatgctcgccatgacccccgat
gacctccaggaaaagggcgtggcttactgctccacctacacccactgtgagatccatcca
tccatgatcctaggagtctgtgcttccatcattccttttcctgaccacaaccagtctcct
aggaacacctatcagtcggctatgggcaaacaggccatgggcgtctacatcaccaacttc
catgtacggatggacacgctagctcatgtgttgtactaccctcagaaaccgctggtcacc
acccgatccatggagtacctgcgcttcagagagctacctgcaggcattaactccatcgtg
gcgattgcctcgtacacgggctacaaccaggaggactctgtgatcatgaacaggtcggct
gtggaccgaggcttcttcaggtctgttttctatcgatcctacaaagagcaggagtctaag
aaaggctttgatcaggaggagatctttgagaagccgactcgtgaaacctgtcagggtatg
agacacgccatttatgacaagctggacgatgacgggctcatcgcgcccggcgttcgtgtg
tctggggaggacgtgatcatcgggaagacggtcacgctgccggagaatgacgacgagctg
gacagcaccaaccgacgctacaccaagagagactgcagcaccttcctgagaaccagcgag
accggcatcgtggaccaggtcatggtgaccctcaaccaggagggatacaagttctgcaag
atcagggttcgatcagtccggattcctcagatcggagacaagttcgccagcagacacgga
cagaaaggaacctgtgggatccagtaccggcaagaggacatgcctttcacctgtgaagga
atcacacctgacatcatcatcaaccctcatgccatcccctccaggatgacagtcggccat
ctgatcgagtgtctgcaggggaaggtttctgcaaacaaaggtgagatcggcgacgccacg
ccgtttaacgatgccgtcaacgtgcagaaagtgtccaacctgctgtcggagtacggatat
cacctgagaggaaatgaggttctgtataacggcttcactgggaggaagctcacgtctcag
atcttcgttggtcccacctactaccagcgtctcaagcacatggtggacgacaagatccac
tccagggcccggggccccgtccagatcctcaacaggcagcccatggaggggcgatcacgt
gatggcggtctgcgttttggggagatggagcgtgactgtcagattgctcacggagcggct
cagttcctcagagagcgtctgtttgaggcgtctgacccgtaccaggttcatgtatgtaac
ctgtgtggactgatggccatcgccaacacacggacgcacacgtatgagtgtcgaggctgc
cgcaacaagacgcagatctctctggtccgcatgccgtatgcctgtaagctgcttttccag
gagctgatgtcgatgagcatcgcccctcgtatgatgacatcatag

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