Amphiprion ocellaris (clown anemonefish): 111573776
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Entry
111573776 CDS
T06018
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111573776 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111573776 (smarcc1b)
03036 Chromosome and associated proteins [BR:
aoce03036
]
111573776 (smarcc1b)
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111573776 (smarcc1b)
Chromosome and associated proteins [BR:
aoce03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111573776 (smarcc1b)
PBAF complex
111573776 (smarcc1b)
GBAF(ncBAF) complex
111573776 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
111573776
NCBI-ProteinID:
XP_023133854
Ensembl:
ENSAOCG00000024431
LinkDB
All DBs
Position
15:complement(11148212..11156936)
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AA seq
952 aa
AA seq
DB search
MATVSGGANLGVPGTSQASSGVFAHRKKDSSPSARFWESPDTLAQLDVVRQWMGKHYKKY
VLVDAPSCQALAAVTLQLLQFQEDAFGRQATSPALTKLPAQCYLDLRPGGGLCHILGTAY
KFKVEQGWRRFDLQNPSRTERNVEMFGTIEKALIQNNCMSLPVVYLDPTLDQELASRLTG
IITKHQGTLTEDRTLASHHIYSSPPSTEEDEWMRPVLRKDKHVLVHWGMHPDSYDTWLSS
SDVERDVEEIPHSERPWRVHAGWVLDTDVFNEWMNEEDYCVDERNLPVILRQRIHLQDDQ
DSKSTPSKKRRRSPSPPSSEGRKKGKKGRRRGQPEEEQEEDLTKDMEDPTPVPNMEEVVL
PKNVNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRGENPRLSEGEDNITEQTHHII
IPSYTSWFNYNSIHSIEKRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTS
CRRNLTGDVCAVMRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQ
HKPLQVSASQHMLYFPEKSREKPSDCQNFGLRTDIYAKKHPKTKGASAGREWTEQETLLL
LEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQS
ENPVMSTVAFLASVVDPRVASAAAKAALEEFSRVQEESVDKASDLSNQPEKTESMDAEKL
ETNSNPHQVSVRADGLKVEPSGPNVEGERVKREHAENILADDRDGRGDDDESIGRREGDG
DEGRRGMELELVEGSVATAAASALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIK
LRHFEELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGQPGYTMQH
SGQSMPNRMMPGGGNAQTMAPRHPGAPNGMYPSSQSDGIATAQTGPPPSSHS
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggctacagtgtccggaggcgctaacctcggggttcccgggacaagccaagccagctcc
ggagtattcgcacaccggaagaaagacagcagtccgtccgctaggttctgggagagtccg
gatactttagcccagctggatgtggtgcggcaatggatggggaagcactacaaaaagtat
gtgttggtggatgccccgtcttgtcaggctctggctgcagtcactctacaacttctccag
ttccaagaggatgcctttggtcgacaagctaccagtcctgcactcaccaaactacccgca
cagtgctacctggacttgcgacctgggggtggactctgtcacattcttggcactgcttac
aagttcaaagtggaacagggctggcgaaggtttgacctgcagaacccatcaaggaccgag
aggaatgtggaaatgtttggtacaattgaaaaagcactgatccagaacaactgtatgtca
ctgcctgtggtatatctggaccctacacttgatcaggagctggctagcagactgaccggc
atcatcaccaaacaccagggcactctcaccgaggacagaacgctcgccagtcatcacatc
tattcctcacctccttctacagaagaggatgagtggatgcgtcctgtcttgcggaaagac
aagcatgtgctggtacattggggaatgcaccctgatagttacgatacttggctgtcctca
agtgatgttgaacgagacgttgaagaaattccacattcagaaaggccatggagggtccat
gctggttgggttctggacacggatgttttcaatgagtggatgaatgaggaagactattgt
gtggatgagaggaatctacctgtcatcctccgtcaacgtattcacctccaagatgaccag
gactcaaagtccaccccctccaaaaagagaagacgctccccttctcctccctcctctgaa
ggcaggaagaaaggaaagaaggggagaaggcgtggacagccagaggaagagcaggaagag
gacctgaccaaagacatggaggacccaactcctgtgccaaacatggaagaggtcgtatta
cccaagaatgtcaatttgaagaaagacagtgaaaacactcctgtgaaaggagggaccatg
gctgacctagatgaacaagaagatgatttcccaggaagggaagatgaggagggacgagga
gaaaacccacgcctgtcagaaggagaggacaatatcacagaacaaacccatcatattata
ataccaagttatacatcttggttcaattacaacagcattcactcaatagaaaaacgcgca
cttcctgaattcttcaatggaaagaacaagtcaaaatctcctgaaatctacctggcatat
cgtaacttcatgatcgacacataccggctcaacccccaggaatacctcagttcaacgtcc
tgtagacgcaacctcactggagacgtttgtgctgttatgagggttcatgcatttttggag
cagtggggtttgattaactaccaagtggatgcagagagcagacccctccccatgggacct
ccacccaccccccatttcaatgtgctggctgacacaccatctgggctggctcccctacaa
cacaaacccctgcaggtgtcagcctcacagcacatgttgtatttcccagaaaagagcaga
gagaaaccttcagactgccagaacttcggtctgcgcactgacatctacgcgaagaaacac
cccaagactaaaggagcaagtgcaggaagggaatggacagagcaggagacactcttgctt
ttggaggccttagaggtttacagagacgactggaacaaagtatcagagcatgtgggctcc
agaacgcaggacgaatgtattctccacttccttcgtctgccgatagaagatccttacctg
gaagactcttctgcctctctggggccgctggcctatcagcctgtgccttttagccaatca
gagaaccctgttatgagcactgtggccttcttggcgtctgtggtggatccacgtgtggca
tcggctgcagctaaggctgcactggaggagttttcccgagtgcaagaggaatcggtagat
aaggcatctgatttgtctaaccagccagaaaaaacagaatcaatggatgcagaaaaactg
gagacaaattccaacccccatcaggtctccgtaagggccgatgggttgaaggtggaaccc
agtgggccaaatgtggagggagaacgagtcaaaagagaacatgctgaaaatatacttgct
gatgacagagatggacggggagatgacgatgagagcataggccggcgagagggagatgga
gatgagggtagaagagggatggagctggagctggtggagggcagcgttgccacggcagca
gcttctgctctggcctcagctgccacaaaggccaagcacttggcggcagtagaagagagg
aagatcaaatccttggtggctctgctggtagagacccagatgaagaagttggagatcaag
ctgagacattttgaagagctggagaccatcatggaccgcgagaaagaggcgttggagcag
cagcggcaacagctcttgtcagagagacagacttttcatactgagcagctaaagcaggcg
gagatgaaggttcgccagcagagggagcagcaagggcagccaggttacacaatgcagcat
tcaggccagtccatgcccaaccggatgatgccaggtggaggaaatgcccagacgatggcc
ccgcggcaccctggagctcccaatggcatgtacccatcctcacagtccgatggcatagca
acggctcagactggtcctccaccatccagtcacagctga
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integrated database retrieval system
