Amphiprion ocellaris (clown anemonefish): 111573939
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Entry
111573939 CDS
T06018
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111573939 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111573939 (cstf2)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
111573939 (cstf2)
U7-dependent histone pre-mRNA processing factors
111573939 (cstf2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
111573939
NCBI-ProteinID:
XP_023134088
Ensembl:
ENSAOCG00000020905
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All DBs
Position
13:14085471..14100154
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AA seq
510 aa
AA seq
DB search
MANVAAAAAAAAAAAAAASRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRL
VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG
APIIESPYGDTVQPEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQ
LAYALLQAQVVMRIVDPEIALKMLHRQTPVQPLVSSGQGAGAPPANPPAAQPSVPVSQPQ
PVPGMHVNGAPQMMQPPAMGVVPGPMPGPGPGPGPAGPPGNLQHSPTGSSGQAAIERPQG
PGGIPPRGLLGDGPNDPRGGTLLSVTGEVIDPNRSYMGAPPPHQAPPVHMSQMASGPPPD
MRGPAMDMRGPPMGEPRNMMGDPRGPPMMEQRGPPIETRGRDPRAMDTRGPVAGQRVPIA
AGMPGPVPHSMGPNAPPPARPGPGISGVPPSGGGFSPGQSQVSTQDQEKAALIMQVLQLT
PEQIAMLPPEQRQSILILKEQIQKTASGAP
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgttgctgctgccgccgccgccgctgcagccgccgctgctgccgcgagtaga
gatccagccgttgatcggtcgctacgatcagtgttcgtgggaaacattccatacgaagcc
acagaagaacagctgaaagacatcttttctgaagtcggacttgttgtcagcttcaggtta
gtatatgacagggagactggaaagccaaaaggatatggtttctgtgaatatcaagaccag
gaaacggccctcagtgccatgcggaacctgaatgggagagagttcagtggtcgggctctc
cgtgttgacaatgcagccagtgagaaaaacaaggaagagctcaaaagtttgggaacaggc
gcccccattatcgagtctccctacggagatactgtccaaccagaagaggccccagagtcc
atcagcagagccgtggccagtctgccaccagagcagatgtttgaacttatgaaacagatg
aagctgtgtgtgcaaaacagtccccaggaggcaaggaacatgctgctgcagaaccctcag
ctggcctatgctctgttacaggcccaagtggtcatgcggattgtcgaccctgagatcgcc
ttgaaaatgctccatcgccaaactccagtccagcctctggtttcaagcggacagggtgca
ggagcaccaccagccaatcctcctgctgcacaacccagtgtaccagtgtctcagccacaa
cctgtgcctggaatgcatgtcaatggagcaccacagatgatgcagcccccagctatgggt
gttgtccctggaccaatgcctggaccaggacctggaccaggaccagctggacctccagga
aaccttcagcattctcccacaggatcgtctggtcaagctgctatcgagcgacctcaagga
ccaggcggtatcccccccagaggcctgctgggagacggtcccaacgatcccagaggagga
actctgctgtctgtcaccggagaggtcatagatcccaaccggagctacatgggagctcca
ccaccacaccaagctccacctgtacacatgtcccagatggcaagcggaccccctccggat
atgagagggcctgcaatggacatgagaggcccacccatgggtgaaccacgaaacatgatg
ggtgaccccagagggcccccgatgatggagcaacggggaccgcctattgaaaccagaggc
cgtgacccgagggcgatggacacccgtggaccagtggcgggtcagagggttcccatagca
gcaggaatgccaggccctgtcccgcatagcatgggcccaaacgcccctccacctgcaaga
ccgggtcctggtatttctggtgttcccccttcaggaggaggcttcagtccagggcagagt
caggtctccacacaggatcaggagaaggccgccctgatcatgcaggtgctacagctgacc
ccagaacagatcgccatgttacccccggagcagcggcagagcatcctcattctcaaagag
cagattcagaagactgccagcggtgccccttga
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