KEGG   Amphiprion ocellaris (clown anemonefish): 111574023
Entry
111574023         CDS       T06018                                 
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03018  RNA degradation
aoce03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aoce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111574023 (lsm4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111574023 (lsm4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aoce03019]
    111574023 (lsm4)
   03041 Spliceosome [BR:aoce03041]
    111574023 (lsm4)
Messenger RNA biogenesis [BR:aoce03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111574023 (lsm4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111574023 (lsm4)
Spliceosome [BR:aoce03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111574023 (lsm4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 111574023
NCBI-ProteinID: XP_023134182
Ensembl: ENSAOCG00000006414
UniProt: A0A3Q1C2Q5
LinkDB
Position
2
AA seq 148 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGAGRGLFGGRGRGMTG
PGRGQQQQQQQQQPDKKPGKPPGMKNQH
NT seq 447 nt   +upstreamnt  +downstreamnt
atgcttcccctgtctctgctgaagactgcccagaaccatcctatgctggtggagctgaag
aatggagagacgtacaacggccacctggtcagctgtgataactggatgaacatcaacctt
agagaagtcatctgcacctccagggatggagataagttctggaggatgcctgagtgctac
atccgaggaagcaccatcaaatatctgcgaatccccgatgagatcatcgacatggtgaag
gaggaggtggtgtcgaagggccgcggacgtggaggcgcccagcagaacaaacagcagggc
aaaggcagaggaggagccggccgaggtctgtttggaggccgtggtcgagggatgaccggt
cctggtcggggccagcagcaacagcagcagcagcagcagccggataagaaaccaggcaaa
ccaccaggaatgaagaaccagcactga

DBGET integrated database retrieval system