Amphiprion ocellaris (clown anemonefish): 111574309
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Entry
111574309 CDS
T06018
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aoce03016
]
111574309 (rtcb)
Enzymes [BR:
aoce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111574309 (rtcb)
Transfer RNA biogenesis [BR:
aoce03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111574309 (rtcb)
Prokaryotic type
tRNA splicing ligases
111574309 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
111574309
NCBI-ProteinID:
XP_023134612
Ensembl:
ENSAOCG00000005662
LinkDB
All DBs
Position
21:complement(432442..438128)
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AA seq
505 aa
AA seq
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MSRSYNDELQFLDKITSNCWRIKKGFVPNMQVEGNFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggagctacaacgatgagctgcagtttctggataaaatcaccagcaactgttgg
aggattaaaaaaggcttcgttcccaacatgcaggttgaaggaaacttttacgtaaacgat
tctctggagaagctgatgttcgaggagcttcgtaacgcctgtcgaggaggaggtgtggga
ggattcctgccggccatgaagcagatcgggaacgtggcggcgctgccaggaatcgtacac
aagtccatcggtctcccggacgtccactctggatacggattcgccattggaaacatggca
gccttcgacatgaacgaccccgatgctgtggtgtctccagggggcgttggtttcgacatt
aactgcggcgtccgtctcctgaggaccaacctggatgagggggatgtccagccggtgaaa
gagcagctcgctcagtcgctgttcgaccacattccagtcggagtcggatccaagggggtc
attcctatgggagccaaggacctggaggaggccctggagatgggggtggactggtccctg
agggagggctatgcctgggctgaggataaggagcactgtgaggagtacggccggatgctg
caggccgaccccaacaaggtgtcctctaaggccaagaagagaggcctgccacagctgggc
actctgggagcaggtaaccactacgctgagatccaggtggtggatgagatctacaatgac
tacgctgctaagaagatgggcatcgaccataagggtcaggtgtgtgtgatgatccacagc
ggcagcagaggcctgggacaccaggtggccacagacgctctggttgctatggagaaggcc
atgaagcgggataagatcacagtgaacgatcgacagctggcctgcgctcgcatcacctcc
caggaggggcaggactacctgaagggcatggcggccgcaggaaactacgcctgggtcaac
cgttcctccatgaccttcctcaccagacaggccttctccaaagtgttcgggacgacgccc
gacgacctggacatgcacgtcatctacgacgtttctcacaacatcgccaaggtggaggag
cacatggtggacgggaagcagagaaccctgctggtccaccgcaagggttctacccgggcc
ttccctcctcaccaccccctgatccccgtagactaccagctcacagggcagccggttctg
atcggaggaacaatgggaacctgcagctacgttctgacgggaaccgaacaaggcatgacg
gagacgttcggaaccacatgtcatggagcgggtcgagctctctctagagccaagtctcgc
aggaacctggacttccaggacgttctggacaaactggccgaccagggcattgccatcaga
gtagcttcacccaaactggtgatggaggaggctcctgaatcgtataaaaacgtgacggac
gtcgtcaacacatgtcacgacgctggaatcagtaagaaggcgatcaaactgcgaccgatc
gctgtgatcaaaggctga
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