Amphiprion ocellaris (clown anemonefish): 111574491
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Entry
111574491 CDS
T06018
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03440
Homologous recombination
aoce03450
Non-homologous end-joining
aoce04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111574491 (rad50)
03450 Non-homologous end-joining
111574491 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
111574491 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoce03032
]
111574491 (rad50)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111574491 (rad50)
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
111574491 (rad50)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
111574491 (rad50)
BRCA1-C complex
111574491 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
111574491 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
ABC_tran
zf-met
AAA_29
AAA_16
AAA_13
AAA_22
Motif
Other DBs
NCBI-GeneID:
111574491
NCBI-ProteinID:
XP_023134881
Ensembl:
ENSAOCG00000016671
UniProt:
A0A3Q1BDK4
LinkDB
All DBs
Position
14:complement(7710994..7738326)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPRDAHETDVRAQIRLLFSDVNGEKVSIHRSMSCTQKAKNYSFKSLEQVITR
MKDGEKVSLSSKCGELDREMISSLGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALETMRQLRLKQTQTVKECQVELRYLKQNKEKAQQIRDTLATKEAQLMASKDS
IQQIESQIDPLENRLMDIDTKLGKVMKLDNDIKALESRKKQMEEDNKELEETMEQVFQGS
DEELQQIYQNHQRTVREKERRLTDCQKELERAGRECQRLNRVKADLLVEQGRLQLEADRH
TENIKNRDGLVRSLSSYLEMEGYDRTPFTTLQLESFHRHVTQRLEQEKETVSQVMADLQE
KERQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQELRNVRADLQRLEGSSNRLQELENE
LAKAERELQSAVQSSNVDELKAEVVELQREKAELDCTQRQLDQEMETLNTHTTARTQMDM
LKKDKTEKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYAKSKEINGTRDRLAKLNKD
LASGEQNKSHIAAELRKKEQQLAGDEEKFFNVCGSQDLEQDLGKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVITDMQSKLRLVPDKLKNTEQDLK
RKERKRDEMISLRPVRQSIVQFQEKELPELRNRLQTVNREIERLKNDVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLKEVERKIAQQSAKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQMLKSAVNETKAEKLQLSSDMQKQQQLEEQCVEFTTEIQA
LTRDIREAKEQLSPLSAALEKLQQEKQELVERKRQRQEEGQEKINSIKERIKGINILERD
ITKYVDEGKDEYKEQKESELQETNTQLHEAEKHKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKDVVAKREALMKDMGDMQVLQLRQERREAERKLEDLKKNRSIALGRQKG
FEEQIMEHRKELREDQYSKADELYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVRRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEISKCSITSLSSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagacaagatgagcatcctgggggtgaggagctttgggattgaggataaa
gacaaacaagtcatctctttcttcactcctctgacagttctggttggacctaatggagca
gggaaaacgactattattgaatgccttaagtatgcaacatcaggagaacttcccccagga
tctaaaggaggtgcttttgttcatgatccaagagatgcccacgagacagatgtgcgagcg
cagattcgactcttattctcagatgtcaatggagagaaagtatccattcatcgctccatg
tcctgcactcagaaagcaaagaactactccttcaaaagcttagagcaggtcattacgaga
atgaaagatggtgagaaagtgagcttgtcttctaagtgcggtgagctggaccgggagatg
atttcttcattgggcgtatcaaagcctgtgttgaatcacgtcatcttttgtcaccaagag
gagtctaactggccacttagcgagggcaaggcgctcaaagacaagtttgactccatattc
gctgcaaccaagtatatcaaagctctggagacgatgcgtcagctgcgtctcaaacagact
cagacagtcaaagagtgtcaggtggagttgcgctacctgaagcagaacaaggagaaagcc
caacagattagagacaccttggccactaaggaggctcagctgatggcctcaaaagacagc
atccagcagatagagagccagattgatcctcttgagaatcggctgatggatatcgacaca
aaacttgggaaagtgatgaaactggacaatgatatcaaggctttggagagcagaaagaaa
cagatggaagaggacaacaaagagctggaggaaacaatggaacaggtgttccagggttca
gatgaagagctacaacagatttaccagaaccaccagagaaccgtgagggagaaggagagg
cggctgacagactgccagaaggagctggagagagctggacgagagtgtcagagactcaac
agagtcaaggctgatctcctcgttgaacaaggccgtctacagctggaagctgaccgccac
actgaaaacatcaagaatcgtgatggtctggttcgctctttgtcatcctatctggagatg
gagggttacgaccggacaccttttaccactcttcagcttgagagttttcatcgtcacgtc
acacagagactggagcaggaaaaagagaccgttagtcaggttatggcggacctgcaggaa
aaggagcggcagaagcagcagtcgattgatgaaatgagagataagaagactggcctggag
agaacagtggagttgaagagagacctgcagggaaagaagcaacaagaactgaggaatgtc
agggcagacctgcagaggctcgagggttcttctaatagactgcaagaactagaaaatgaa
ttggctaaagcggagcgtgagcttcagagcgccgttcagagctccaacgtggatgagctg
aaggctgaggttgtggagctccagagagaaaaggctgaactcgactgcacacagaggcaa
cttgatcaggagatggagacgctcaacacacacacaactgcacgcacacagatggatatg
ctgaaaaaggacaagacagagaaggaggagcaagtacggaagatcaagtctcgtcacagt
gaggatctggtctccctgctgggccactttccaaacaagagagagctggaggactggatc
tatgccaagtccaaggaaatcaatggcaccagggacagactcgcaaaactcaataaggac
ttggcatcaggtgagcagaataaaagccacatcgctgctgagctgcgtaagaaggagcag
cagttagccggtgatgaagaaaagttcttcaatgtgtgcggcagtcaggatctggagcag
gacctgggaaaactgcaagaggatctggagaagatatccaaacaaagagcgatgcttgct
ggagccacagcagtgtacactcagtttatcagtcagctgacagaggagagggagccctgc
tgccctgtatgccagcgaacgttcccctccgagtctgacctgcaggaagttatcactgac
atgcagtcaaaactacgcctggtgccggacaaactaaaaaacacagagcaggacctgaag
aggaaagagaggaagagagatgagatgatatctctcagacctgtaaggcagtccattgta
cagtttcaggagaaggagttgcctgagttgagaaaccgtctccagactgtgaacagagaa
attgagaggctgaagaatgatgtggaggagcaggaaactctgctcggtaccctgatgtct
gaggaggaaaccgctaaggcctgcctacaggacatatctctgatggacagatatctgatg
gatcttaaagaggtagagaggaaaatcgctcagcagtcagccaaactccagggagtagac
ctgaccagaaccatccagcaagtcagtcaggagaaacaagaaactcagcacaagctcgac
acaacttccagcaagatggagctgaaacgtaagctgatccaggaccagcaggatcagatt
caaatgctgaaaagtgcagtgaacgagacaaaagcagagaagcttcagctgagcagtgac
atgcagaaacagcagcagctggaggagcagtgtgtcgagttcaccacagaaatacaggcc
ttaaccagggacatcagggaggcaaaggaacagctgtcccctctgtctgctgctctggag
aagctgcagcaggagaaacaagagctggtggagcgcaagcggcagaggcaggaagaaggg
caggagaagatcaattccatcaaagagagaataaaggggatcaacattctggaaagagac
attactaaatatgtcgatgagggaaaagacgaatacaaagagcaaaaagagtctgaactt
caagaaaccaacactcagctacatgaggctgagaaacataaagagaaaattaataaggag
atgggaaacatccgtcaggacatagacactcaaaaggtccaggagcgctggttacaggac
aacctgactttaaggaagcgtgtagaggagttaaaggatgttgtggccaaacgtgaggct
cttatgaaagacatgggcgacatgcaggtcttgcagctccgccaagaacgtcgtgaagca
gaacgtaagctggaagatttgaaaaagaaccgcagcattgcactgggacgccagaaaggc
tttgaggagcagataatggagcacagaaaagagctgcgagaagatcagtacagcaaagct
gatgaactctacaaaaacaagatgattacaatgaggaccacagagctggtcatcaaagac
ctggatctctactacaaggctcttgatcaaaccatcatgaaattccacagcatgaagatg
gatgagatcaataagatcatcagagatctgtggcgcagcacctacaggggtcaagatatc
gagtatgtggagatcaggtctgatgtggacgagaatgcttctgctggagtgaggcgaagg
gtttacaactacagagtagtgatggtgaaaggagacacagctttagatatgagaggacgc
tgcagtgccggtcagaaggtgttggcgtccctcatcatccgtctagctctggcagaaaca
ttttgtctgaactgtgggattctggccctggatgagcccaccacaaacctggaccgggag
aacatcgagtcactggcacacgccctcgtggaaatcatcaagagtcgctctcgccagcgt
aacttccagctgctggtcatcacccacgacgaggattttgtggagctgctggggcgctca
agctacatcgaacacttctaccgcatccgtaagaaccaggaccagaactccgaaatctca
aagtgcagcatcacctcactctcatcctatgtccactga
DBGET
integrated database retrieval system
