Amphiprion ocellaris (clown anemonefish): 111574625
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Entry
111574625 CDS
T06018
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03030
DNA replication
aoce03410
Base excision repair
aoce03420
Nucleotide excision repair
aoce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111574625 (lig1)
03410 Base excision repair
111574625 (lig1)
03420 Nucleotide excision repair
111574625 (lig1)
03430 Mismatch repair
111574625 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoce03032
]
111574625 (lig1)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111574625 (lig1)
Enzymes [BR:
aoce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111574625 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
111574625 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
111574625 (lig1)
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
111574625 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
111574625 (lig1)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
111574625 (lig1)
NER (nucleotide excision repair)
Other NER factors
111574625 (lig1)
MMR (mismatch excision repair)
Other MMR factors
111574625 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
111574625
NCBI-ProteinID:
XP_023135087
Ensembl:
ENSAOCG00000011892
LinkDB
All DBs
Position
10:complement(29299763..29379884)
Genome browser
AA seq
1012 aa
AA seq
DB search
MQRSIASFFQAKSKDKEIQKKTTNEPVKKPVKSPLKVQNGAREADSPIKKVVKRRRQIVD
SDDDEVPVVKDVAAKGQGDKDASGKTEKKDDVFKAVPTPLSPPPAPATPVTPATPATPAS
SASPGTPSTPNSISPSGIVKRKTARKMFPKRKLDESRSDGESPKEEPEAKEEQGQQNKRP
RVEAVASSAGNTDEPMEEGAKEEKVEKAVAEANSPDEEVENKKNKKGDKAKEEEEQVEKK
SSDEKEKKAEGAEKKNEAKEKTDDEKGSAVAKKEVAEKDKRDREGSPKSPTAKKQKEAKE
QKDKEAAKKAPISSFFAPRKATVKTEKAEKNEGEKKASAERKSSEEESKDTKGESTSGQT
DYDPSRPNYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSP
DDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAE
SSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVR
SLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILK
QTYCEMPNFDVLIPVLLKEGIDQLPCHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFT
CEYKYDGERAQIHILENGEVKIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDSEAVA
WDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLKE
SFSEVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLK
LKKDYLEGVGDTMDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDED
LEQHYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDP
EKGISLRFPRFLRIRDDKKPEDATTGSQIADLYKKQQQIQNQGDKADPEDYY
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatccttctttcaggccaagagcaaagacaaggaaatccagaag
aaaaccacgaatgaaccagtgaaaaagcctgttaagagccctcttaaggtgcagaacggc
gctcgggaagctgattcacccatcaagaaggtcgtcaaacgccggcgtcagatcgtggac
agcgacgatgacgaagtgccagttgttaaagacgttgctgccaaaggacaaggagataaa
gatgcctctggcaaaacagaaaagaaggacgatgtctttaaggccgttcccacccccctg
tctccaccgccagccccagccacgcctgtaactcccgctactccagctaccccggcttct
tcagcctcaccaggaacccccagcacgcccaactccatctccccatctgggattgtcaag
cgcaagactgcgaggaagatgttcccgaagaggaagctagacgagagccggagcgacggc
gagagtccaaaggaggagcccgaggccaaggaggagcagggtcagcaaaacaaacgaccc
cgtgtggaggccgttgccagcagtgcagggaacaccgatgaacccatggaggagggagca
aaggaagaaaaggttgaaaaggcagtggctgaggctaacagcccagatgaagaggtggag
aacaagaagaataagaaaggagacaaggccaaggaggaggaggagcaggtggagaaaaag
agctctgatgagaaagaaaagaaagctgagggggcggaaaagaaaaatgaagcaaaggag
aagacggatgatgagaaagggtccgctgttgccaagaaggaagtggctgaaaaggacaag
cgagacagagaagggagcccaaaaagtccaacggcgaaaaagcagaaagaagcaaaagag
cagaaagataaggaagcggccaagaaagcacccatcagcagtttctttgctcccagaaaa
gcaacagtgaagacagagaaagcagagaagaatgagggggagaagaaggcgagtgcagag
aggaagagttcagaggaggagagcaaagacaccaaaggtgagtcaacctcaggacagaca
gactacgatccatccaggccgaactaccatcctgtggaccacgcatgttggaagcagggc
cagaaagtgccatacttggcggtggctcgcacctttgagaagattgaagaggactctggc
aggctgagaaacatcgagacgctgtcgaacctgctccgctccgtgctgctgctctctcca
gatgatctgctgtgctgtgtgtatctgtgtttgaaccaactgggtcctgcctacctgggg
atggagctgggcgttggggagacggtgctgatgaaagctgttgctcaagcaactgggcga
caattggacaaaattaaagcagaagcacaggagaaaggagatttgggcctggtggccgag
agttcccgtagcaaccagcgcatgatgttccagccggccagtctgacagcagggggcgtg
ttcaggaaattgaaggaaattgccagcatgagtggtaactcggccatgaataagaaaatc
gacatcatcaaaggcctctttgtggcatgccgcttttcagaggcccgctacattgtcagg
tctctggctgggaagctgaggattggacttgctgagcagagtgtcctctctgcactgagc
caagctgtctgtctcacccctcctggacaaggtttccctcccgctgttatcgacgcaggg
aaggggatgagtgctgagagcaggcgggcctggatcgaagagaagagtctcattctcaaa
caaacttactgcgagatgcccaatttcgacgtccttatccccgttcttctgaaagaaggc
atagaccagctgccctgtcactgcaagctcactccaggcgtaccgctgagacccatgttg
gctcaccccaccaagggggttggcgaggtgatgaagaagttcgatgaggcggcgttcacc
tgcgagtacaaatacgacggcgagcgtgcacagatccacatcctggagaatggcgaagtc
aaaatattcagccgcaaccaggaagacaacaccagcaaataccctgacatcatctcccgc
attcccaaggtgaagaaggactcagtggtgtcctgtgtcctggactcggaggcggtggcc
tgggatcgtgagaagaaacagatccaacccttccaggtcctcacgactcggaagagaaag
gacgtggatgcctcggagatcaaagtccaagtgtgtgtgtacgcctttgacctcctctat
ctcaacggcgagtctctggtgcgacagccgttgtgtcgacgtcgggctctgctgaaagaa
agcttctcagaggtagagggagagttcgtgttcgcccgatccatcgactctgacaacacc
gacaccatcgccgagttcctggagcagtcggtccgagactcctgcgagggcctgatggtc
aagactctggagaaggatgccacctacgaaattgcaaaacgctctcataattggctcaag
ctgaagaaggactacctggagggggttggcgatacgatggacttgtgcgtgatcggtgca
tatctggggaaaggaaaaaggacgggcacctacgggggcttcctgctggcctgctacgac
gaagaaaatgaggaatttcaatccgtctgcaagatcgggacaggcttcaaggatgaagat
ctggagcagcattacaagttcttaaaggagcacattttgccaaaaccccgtgcctactac
cgcgtcgaccagtcagccgagcccgacgtctggctggatgctgtgcaggtttgggaggtg
aagtgtgccgacctctcactgtcacccgtctacaaagccgccatgggaatggtggatcca
gaaaagggaatttctctgagattcccccgtttccttcggattagagatgacaagaagcct
gaggatgccacaaccggatctcagattgctgatttgtacaagaagcagcagcagattcag
aatcagggggataaagctgacccagaggactactactga
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integrated database retrieval system
