Amphiprion ocellaris (clown anemonefish): 111575408
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Entry
111575408 CDS
T06018
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04382
Cornified envelope formation
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111575408 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111575408 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111575408 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111575408 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111575408 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111575408 (col4a6)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111575408 (col4a6)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111575408 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111575408
NCBI-ProteinID:
XP_023136266
Ensembl:
ENSAOCG00000007547
LinkDB
All DBs
Position
23:complement(21207117..21353068)
Genome browser
AA seq
1713 aa
AA seq
DB search
MKFLVCALAVALAVGSAHGGTKFDEPCAGLDCSGGCRCNPEKGSRGRPGPLGEVGQSGPE
GPRGGPGPSGPKGEKGHIGVKGPSGPKGDKGPMGVPGFQGNDGVPGHPGQEGSRGSPGLD
GCNGTRGEPGAPGFGTGAPGFPGPTGPTGPKGQKGEPRYISDGNSISGLPGLPGADGQPG
IRGPDGPPGFSGPRGPEGYSGPPGPPGPPGLMGSRSDGYQGERGDKGDVGLPGPSGTPGD
GSLSGEQTLTIYKGDKGEPGPKGVRGFPGSPGRPGPFGYRGEYGEKGIPGYPGARGPPGF
NGPQGAPGQRGFRGNPGFPGQPGYIGPKGDQGEPGLPGPPAYVNNLGTSVQGPPGDSGLG
GLPGIPGEQGAPGFAGAPGPPGVGGIFSGRPGSPGFPGTPGPKGEKGSPGAPTYGVEGLP
GSPGLPGPVGPPGPQGVSGISIPPCVIYPEGPVRPKGSPEGPATSFPGLPGSPGPRGDPG
NPGFRGVRGDPGDCGCLGGGVSGLPGLPGVPGANGSPGFPGRKGEPGDGGSPGLNGVPGS
TGRAGERGGFGRKGEKGASYYPSLGLGVKGELGASGPRGPTGETGKPGRDGLPGFPGAPG
PPGDAGFGTVGEKGFPGFPGSKGRPGGPGEPGIGYAGTPGFRGETGDPGIPGLPGQPGLP
GPRGENSCGGVNDAGEGTGQVLPCVFPGEDGAPGVPGIPGRPGPKGEPGFPGGSGRPGFD
GAKGERGDPGFGGQPGPQGFPGPRGDAGVPGVPGQIFDGGRGKDGVPGRPGGKGQPGEVL
GATPGAPGQDGLPGIPGDKGLPGTPGGPGSPGFDARSGVPGLKGERGVDGLPGIPGLPGP
PGDPTGGITGRPGAPGAKGLSGPPGFPGRKGDRGDPGFPGPAGMKGTPGLPGTPGSPGLR
GPPGPPGPGTREGIPGIPGTKGERGFSGVMGFPGLPGRPGSPGFPGGKGVSGGPGRDGFP
GGPGFPGQKGERGYPGLPGLPGIPLPSGLVEKGDPGFPGSSGLPGFPGPRGDKGLPGLPG
RQGLPGLPGFAEQSKGQPGQPGFPGQPGTPGFPGPKGEAGIMGFPGMSGPRGDDGAPGFP
GNPGESGRPGGKGLPGESYGYPGGPGAKGQPGDSGFPGGRANDGAPGDNGFPGSPGFPGA
KGGPGEGGRPGIMGSPGFPGPKGMPGFPGRRGPDGTLGLPGGPGGPGSKGLPGSPGLDGL
NGLAGPKGLTGTPGGSAGGRPGAPGIPGAKGERGLSYPGGPGFSGSKGERGEPGVSGLPG
FPGRPGLPGAVIGSDIPGPLGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDSGLPG
FPGSPGRKGESGFPGGPGLPGSPGFKGERGETGFSGGPGLKGFSGDPGYFGGKGPKGLRG
PPGRKGFPGITLPPEVFRRPFGDQGFPGESGAPGTPGEPGQPGMPGRPGPNGRPGGVGKL
GRTGEPGLPGLVGDGGPPGFPGPTGEQGPPGNIGRPGTPGSVGRSFGIGFTLVKHSQNSQ
PPMCPQGMSKLWEGYSLLYVEGQEKAHNQDLGQPGSCLPKFSTIPFLYCSPNEICYYASR
NDKSYWLSTTAPIPMMPVAEGQIQPYISRCSVCEAPSQAVAVHSQDMTIPNCPPGWRSLW
IGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVD
PSQEFLYSPAQETLKGGQERSKVSRCQVCSKIL
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctggtttgtgcgctggcggtggccttggcggtgggatctgcgcacggaggc
accaagtttgacgagccatgtgcaggtctggactgcagtggaggctgcaggtgcaacccg
gagaaaggcagcaggggtcgtcctggacctctcggtgaggtcggtcagagtggacctgag
gggccacgtgggggtccggggccttcggggcccaaaggagagaaaggccacatcggagtg
aaaggaccgtctgggcccaaaggagacaaagggccaatgggagttcccggatttcaagga
aacgatggagtacccggtcacccaggtcaggagggcagccgaggatcgcctggcctggac
ggatgtaacgggaccagaggggaacctggagctccgggcttcggaaccggagcgccgggc
ttccctggacccactggaccaactgggccgaaaggtcagaaaggagaacctcgatatatc
tccgatggcaacagcatctcgggtttaccaggtttaccaggagctgacggtcaacctggt
atcagaggtcctgatggtccacctggtttctcaggtcccagaggccctgaaggttactcc
ggcccacctggtcctcctggtcctccagggctgatggggagccgtagtgacggatatcaa
ggagagagaggagacaagggcgacgtgggtcttcccggacccagtggtactcccggcgac
gggtcgctaagtggcgaacaaacgctcactatctacaaaggagataagggtgaaccgggt
ccaaagggagtccgaggattcccaggaagtccaggtcggccgggacctttcggttatcgt
ggtgaatatggagagaagggcatccccggataccccggggcaagaggtcctccagggttt
aacggacctcagggcgctccaggacagcggggattcagagggaatccaggattccccggc
cagccaggatacattggacccaagggagaccagggagaaccaggactcccagggcctcca
gcttacgtcaacaatctgggcacctctgttcaaggacctccaggtgactcaggtctcggt
ggcctcccaggcatccctggagagcagggcgctccgggatttgcaggagctccaggcccg
ccgggagtaggtggcatcttctcaggtcgtcccggatccccaggttttcctgggaccccg
ggtccaaaaggagagaagggcagccccggtgcaccgacctacggcgttgaaggacttcca
ggctcccctggactccccggacccgttggccctcctggacctcagggcgtctctggcatt
tccattccaccctgcgtcatctaccctgaggggcctgtcaggcccaaaggttctcctgaa
ggcccagccactagtttccctggactgcctggaagccctgggcccagaggagatccgggt
aacccaggattcagaggcgtcagaggtgaccctggtgactgtggctgtctcggaggaggc
gtctcagggttgcctgggttacctggagttccaggagccaacggcagccccggattccct
ggacgaaagggtgagcctggcgacggtggttcacccggcttgaatggtgttccaggatct
actggtcgtgctggtgagaggggcggcttcggtcgtaaaggagagaagggggcttcgtac
taccccagcctgggtttgggggtgaaaggagagctgggagcttctggacccagaggacct
acaggtgaaacaggaaaacctggcagggatggactacctggcttcccaggagcccctgga
cctccaggcgatgctggcttcggcacagttggagagaaaggattcccaggattcccgggt
tctaagggacgccccggtggccccggtgagcccggcatcggctacgccgggacccccggg
tttcgtggagagaccggagaccctggtataccagggttgccagggcagccaggtttgcct
ggaccgagaggtgaaaacagctgtggaggggttaatgacgccggagagggaacgggccaa
gtgctgccttgtgtctttcctggtgaggatggagcccccggtgtgcctggtatacctgga
cgaccaggccctaaaggtgaaccaggttttcctggaggttctggacgtccagggttcgat
ggtgccaaaggagagagaggagaccctggttttggaggtcaacctggaccacaaggtttc
cctggacccagaggggacgctggagttccaggtgttccaggacagatcttcgatggcggc
agggggaaggacggcgttccagggcgtcctggaggcaaaggccagcctggggaagtgctg
ggagccacgcccggagctccaggacaggacggtttacctggaatccctggagacaagggt
ctacctgggacaccgggaggacctggatcacctggtttcgatgctcgttctggtgttccc
gggctgaagggggagcgtggtgttgacggtctgcctggtattcctggactccccggacct
ccaggtgatccgactggtggtattaccggtcggcctggagctcccggtgcaaagggactg
agcggacctccaggtttccctggtcgcaaaggagacagaggagacccaggtttcccaggg
cctgctggaatgaaaggaaccccaggactgcctggcactcctgggtcaccagggctgagg
ggaccccccggacctccaggaccaggaactagagagggaattccaggaatcccaggaact
aagggtgaaagaggtttctcaggagtaatgggtttccctggactaccaggtcgtcccggg
tctccaggatttcctggaggtaaaggggtttctggaggccctggaagagatggatttcca
ggtggacctggattccctggacagaaaggtgagagaggataccccggccttcctggcctg
cctggtattcctcttccatcagggctggtggagaaaggagaccctgggttccccggaagc
agtggccttcctggcttccctggacccagaggtgacaaaggtctgccgggtctacctgga
cgtcagggtctgcctggacttcctggctttgctgagcagagtaaaggacagccaggacag
cccgggttccctggacaacccggaactccaggctttcctggaccaaaaggagaagctgga
atcatgggattccctggcatgtcgggaccacggggtgatgatggtgcacctggtttccct
ggcaaccctggagagtctggtcgacctggtggcaaaggcctacctggagagtcttatggt
taccctggagggccaggagctaaaggccagccaggagattcaggcttcccaggtggtcgt
gccaacgatggcgcccccggtgacaacggctttccaggaagtccaggcttccctggagcc
aagggtggtccaggtgaaggaggacggcctggaataatgggatctcctggtttccctgga
ccaaagggtatgcctggattcccaggaagaagagggccagatgggactcttggcctgcct
ggaggtcctgggggtccaggatccaaaggtttgcctggatctcctggtttagacggactt
aatggccttgctggacctaaaggcctcactggaactccaggtggaagtgcaggaggtcgt
cctggtgcccctggtattccaggcgcaaagggagaaagaggtctctcctaccctggaggt
ccaggattctctggatcaaaaggagagagaggagagccaggtgtttctggactccctggg
ttccccggtcggcctggacttcctggtgcagttattggatctgacatccctggacctctt
ggagaccccggccttcctggattggatggagaatatggtttccaaggtcctccaggtcct
cctgggccgcctggtcctggaacagcccagggagacagaggtgactcagggctgcctgga
ttcccaggctcacccggcagaaagggagaatcgggattccctggaggccctggactccct
ggcagccctggttttaaaggagagcgcggtgagactggcttcagcggaggtcctggtctc
aaaggcttctctggtgaccctggttactttggaggcaaaggcccgaagggattacgaggg
cctcctggtcggaagggtttccctggaatcacgttgccaccagaagtgttccgtcgtccc
ttcggagaccagggcttccctggcgaaagtggagcccctggtactcctggagaacctggt
cagcctggcatgcccggacgtcccggtcctaatggtcgtcctggtggagtcggtaaactt
ggcaggaccggagagcctggtcttcctggactcgtcggtgatggtggacctcctggcttc
cctggacccactggagagcaaggtccccctggtaacatcggtcgtcccggcactcccggc
agcgtcggccgcagtttcggcatcggcttcactctggtgaagcacagccagaactcccag
cctcccatgtgtcctcagggcatgagcaagctgtgggagggatacagtctgctgtacgtg
gaggggcaggagaaggcacacaaccaggacctaggtcaaccagggtcatgcctacccaag
ttcagcaccattcccttcctctactgctcccccaacgagatctgctactacgccagtcgc
aacgacaaatcctactggctttccacaaccgcacccatacccatgatgcccgtggccgag
gggcagatacagccgtacatcagcaggtgctcagtgtgtgaggctccatctcaggctgtg
gccgtccacagtcaggacatgaccatccccaactgtccccccggctggaggagtctctgg
ataggatactccttcctcatgcacacagcagccggtgctgagggtggcggtcaatccctg
gtctctcctggctcctgcctggaggatttccgcgcgactccgttcatcgagtgcaacggg
gccaagggcacctgccactactttgccaacaagtacagcttctggctcaccaccgtggat
cccagccaggagtttctctattcgccagcccaggagaccctgaagggaggccaggagcgc
tccaaagtgagccgctgccaagtctgcagcaagatcttgtag
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