Amphiprion ocellaris (clown anemonefish): 111575409
Help
Entry
111575409 CDS
T06018
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04382
Cornified envelope formation
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
aoce04518
Integrin signaling
aoce04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111575409 (col4a5)
04518 Integrin signaling
111575409 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111575409 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111575409 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
111575409 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111575409 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111575409 (col4a5)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111575409 (col4a5)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111575409 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111575409
NCBI-ProteinID:
XP_023136269
Ensembl:
ENSAOCG00000000396
LinkDB
All DBs
Position
23:21355310..21414822
Genome browser
AA seq
1681 aa
AA seq
DB search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NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagagccgaagagccctcagcccgccgcggcgctgctcttcctgctcctgtgc
gtcgccgtgcagcggtccgactctgcggcttgccaaggatgtacaggatctaaatgtgac
tgcagcggggtgaaaggagccaagggtgagaggggtttcccaggcctcaccggacagcca
ggagtcccaggtttccccggtcctgagggaccaatcggagccagaggagagaagggaagt
gatggaccttcaggaccgactggtccaaaaggaatcagagggcctcctggattaccagga
tttccaggaacgccaggacttccaggtcttccggggcaggacggtcctccaggccccaga
ggagtgccgggttgcaacggaacaaagggtgagagaggtttcccgggaggttcaggaatc
cccggagctcagggaatcccgggtccacctggtctgccgggacaaaagggagacccaggg
gatgtgatttccaccaatcgattcggagagaaaggagcgctgggattgcccggattacca
ggatctcctggcattcctggatctccaggttctcaaggtccactcggccctccaggaccc
agaggtttcgagggtcgtccaggtcctccgggtccaccgggaccaaagggaaacatgggg
ttgaacttccaaggaccaaaaggagaaaagggtgaacccggcttgccaggacctcctgga
cctcctgggcaagtgggagagcagaagaggcctccggagacggagatccagagaggagac
aagggtgaccaaggatatccaggacctaaaggtgacccaggttatccaggacctcctggt
ccctctggtggacagaaaggagagaagggagaaccaggagaggcgggaaaaagaggcaaa
ccaggcaaagacggcgatccaggtcctccaggctttcctggagtcaaaggagaatcaggc
ctcccaggtcctccaggcagagacggagagagaggatttaaaggtgaacgtggattccca
ggtcctccaggagtggtgattggtggttcgacaagtggtcgggtgggccctaaaggtgag
cctggatacccgggatcacctggactcaagggagaccgaggacctccaggtttaaccgga
cctccaggagctccaggacttccagccatcggtggcggtggtgtgcccggctctccaggt
ttccccggagagagaggtcagaagggagaactgggccctccaggactctccctgccaggt
cctccaggacgctccgggtctcctggagcgcagggaccaccagggccacccggacctcca
ggcttctccaccggaggacagacctgcatccctggagagcctggacgtcctgggctgcaa
ggagaccgaggttaccctggagagacgggccagaaaggtgagaagggcgacacctgtgtg
aactgcttcggaggaaccagctccctcccaggaccccaaggacctcctggacagcctgga
ttccccggtggtcctggagctccaggagccaaaggagaccgaggctacccagggaccccc
ggtggtatcggtgctcctggctctcctggtcctcagggtgctccaggtttccccggagag
aagggagacccaggtgatgccatcacagtcagtggtgtgaggggagagaagggtgacacc
ggcttccctggaccccccggtctgcccggtctggacggtcgacccggtcgggacgggcag
cctggagctcagggccccaagggagcttcgggctctctgctggtgaaaggagaacgagga
ctccccggtgagcctggtgcccccggtcttccaggagacaggggccccccaggtggcccc
ggctttggacctcaagggcctcccggagagaaaggcattcagggcgtctcaggaagacct
ggaggtcccggtgcacctggagctaaaggtgaaccgggtctgactgtagcagaaaaaggt
ttaccaggaccccgaggactggatggagagcctggactgcccggtgcaccaggttccccg
ggtcagcctggacagcccggtttccctggtataccaggagccaaaggagaccccggactc
ccaggcatcggactcccaggacccccaggagctaaaggattcccaggtatccccggacag
ccaggatctcctgcaggaccaggcagaccaggagtggatggacgacccggccagcccgga
tttcctggacccaaaggtgaacccggcttcggacttcctggtcctcctggtttaccggga
gtccctggatctaaaggtttccccggaccgaagggagatcctggtatccccggaggcccc
ggttcaccaggacgatctggattcgacggagctccaggatccaaaggtgagcccggtaca
cctggtatacctggagctcgtggcccacctggatcccccagcattggctctctgggaccc
ccaggtgccaccggacctccaggtccgatgggacctccaggattccctggatcaaatgga
gagaaaggagaccccggcactccaggtctagacatccccggtctgccaggagacagagga
agtcctggtttcccagggtccccaggaccgatcggcaccccaggaccccctggaggacca
ggacgggatggtgttcctggacgtccaggtcagaaaggagacatgggtccaatgggacct
ccaggaccttctggaggaccaggaggcccaggaggacctggtgctactggacttaaaggt
gaacctggattcccaggtagggatggttcaccaggaggtcctggtggtaaaggagagagg
ggagaccctggtgtccaggggcctccaggagccagcttgccttcagcggtcacaaaggga
gccaaaggagatcctggactaccaggtgcaccaggttttccaggtcagaaaggcatcagt
ggtcttcccggtgattccggacttccagggtcagatgggcgccctggaatccctggacca
ccaggtcctaaaggagatcctggaatcccaggaggtcccgggggtcctggagccccagga
ctaaaaggcggcatgggagaaatgggattcccaggaccatctgggcagaagggtctacca
ggttcaccaggcagaccaggatccccaggacagccaggaggtccaggtttccctggagcc
aaaggtgaaccaggttctgccggtgttggactgcctggacaacctggacccaagggggag
ccaggccaaccagggttcccgggaagtccaggactgaaaggaaccccaggatcaccaggt
ctcccaggtttaccaggaggtccaggtgctaaaggagaccctggcctgccaggattccaa
ggttcacctggtatccccggtcctaagggtcttgatggtgggccaggtgcaccaggtctc
acaggtgccccaggtagaccaggagagcccggtcgaccgggaggacctggattgcccggt
gagaagggtcaggcaggtcgagacgggatcccaggaccagctggagtcaaaggagaaccc
ggtcttcctggttatggtggtcctggtcctagtgggcttccagggttgccaggtgctaag
ggagacccaggtcttcctggtccatccggcagtcctggtttcccgggacccaaaggagac
cctggcttcccaggtgcccctggtcctccaggtaacagcggccctcctggaccttcagga
caggctctgcagggccctaaaggactccaaggaccccctggaccacccggaagagcaggt
ccagccggcccacagggtccccgaggacccccaggaagtggcggcgttaagggagagaag
ggaattcccggcgctcccggccagcctggcttccccggacagaagggagaaggtggtgtt
ccaggattcccgggttccgctggtcttcctggtccttctggccttaaaggagatgtcggt
ctgcctggcgttcccggattccctggaccaaagggagacccaggacttccgggtcgcggc
ggccttcctggagatcccggagacgtcggaccgactggtcctcctggtgatcccggcatc
cctccagctcccatcgtggtgaagggagagcgaggacctcctggtcctctgggtcagccc
ggttcccgaggaccacctggtgctcctggacgggaaggactcccaggtcagccggggaac
cctggagatcctggtactgagggtcctcctggcttcagcggcccccccggcaggaaggga
gacccaggaccagccggccagcccggtcagcgaggctaccccggtccttctggttccgac
ggtccacagggtcctccgggtctcccaggatcggtctcggcagcccacggtttcctcatc
accagacacagccagtctgtggaggtgcccagctgtccagaaggaacaacccccatctac
gatggctactccctgctgtacgtgcagggcaacgagcgggcccacggacaggacctcggc
acggccggcagctgtctgcgcaggttcagcccgatgcccttcatgttctgcaacatcaac
aacgtctgcaacttcgcctcccgcaatgactactcctactggctgtccacgcccgagccc
atgcccatgtccatggcccccatcaccgggcagagcatcaagcccttcatcagcaggtgt
gcagtgtgtgaagctccagccatggtgatcgcagtccacagtcagaccatccagattcct
acttgcccctcaaactgggaaccgatgtggattggatactccttcatgatgcacaccagt
gccggtgctgagggctccggtcaggccctggcctcccccggttcctgcttggaggagttc
cgcagcgctcccttcatagagtgccatggcagagggacgtgcaactactacggcaactcc
tacagcttctggctagccaccgtggagcaatctgagatgttcaggaagccccagtcggag
acctttaaggcaggtaacctccgggctcgcgtcagccgctgtgtggtctgcatgaagagg
acgtaa
DBGET
integrated database retrieval system
