Amphiprion ocellaris (clown anemonefish): 111575461
Help
Entry
111575461 CDS
T06018
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aoce03000
]
111575461 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
aoce03310
]
111575461 (roraa)
Transcription factors [BR:
aoce03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
111575461 (roraa)
Nuclear receptors [BR:
aoce03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
111575461 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
111575461
NCBI-ProteinID:
XP_023136371
Ensembl:
ENSAOCG00000000264
LinkDB
All DBs
Position
3:11816115..11995183
Genome browser
AA seq
519 aa
AA seq
DB search
MESPPDPASDPGNSASEPATPVRETPVNLETLRKADHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
SYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacagcgcctcggagccggctacc
ccggtcagggaaaccccggtaaacctggagacgctccggaaagcggaccatccagccccg
gttcgaaggcagacctgttccagcaccaacagaggtatctcagtaacaaagaagacacat
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatacat
tacggcgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcagcttactcttgcccccgtcagaagaactgcttgatcgaccgcaccagccgcaaccgc
tgccagcactgccggctgcagaagtgcctggcagtgggcatgtcacgagatgcagtgaag
ttcggccgcatgtcgaagaagcagcgagacagcctgtacgctgaggtccagaagcatcgg
ctgcagcagcagcaacgtgaccaccaacagcagcctggagaggcggagccgctcacacct
agctatggcctctcagccaatggcctcacagagctccatgatgacctcagcggctacatg
gatggtcatacccctgatggcagcaaaccagactcggccgtcagcagcttctacctggac
atccaaccatctcctgaccagtcaggcctggacatcaacggcatcaagccggagcccatc
tgcgactttgccccgggctctggcttcttcccttactgctccttcaccaacggagaaacc
tcccccaccgtgtccatggctgaactagagcacctggcccagaacatctctaagtcacac
atggagacatgtcagtacctgcgagaggagttgcagcagatgacctggcaggctttcctg
caagaagaggtggagagctaccagagcaagccccgggaagtcatgtggcagctgtgtgct
atcaaaataacagaggccattcagtatgtggtggagtttgccaagcgcatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaagtcgtg
tttgtcagaatgtgccgtgcctttgactcgcaaaacaacacagtctattttgatggaaaa
tatgccggacctgatgtgttcaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctct
gcctttgtgttgatgtctgctgaccggtcttggctccaggagaaggtgaaggtggagaag
cttcagcagaagatccaactggccctccagcatgtcctgcaaaagaaccacagagaggat
ggtatacttacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagagaagcttacagctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatacaaggagctgtttggatcagactttgagcagtccatgcccgttgacgggtag
DBGET
integrated database retrieval system
