Amphiprion ocellaris (clown anemonefish): 111575639
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Entry
111575639 CDS
T06018
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X2
KO
K14308
nuclear pore complex protein Nup54
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111575639 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111575639 (nup54)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111575639 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
111575639
NCBI-ProteinID:
XP_023136654
Ensembl:
ENSAOCG00000020529
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Position
17:complement(12818775..12829802)
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AA seq
582 aa
AA seq
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MAFSFGGAASNTAAGTSGFSFGSFGANKTTASTAFGFAPAATTTTASSGFGTLTAPGFGA
TTTTAAAPATGFSFGSTNTGFGGLGAGSTTAGTFGGFGTTTTTAAAPGSTFSFAAPSNTT
GGLFGNTQNKGFGFSSGLGTGAAAGTSGFGTGLGTTGLGGFGGFNIQPTQQQQGGLFGQQ
AQQQGQAQPTQLYQQVTALSAPTLLGDERDSILAKWNQLQAYWGTGKGYYSNNNPPVDFT
QENPFCRFKAVGYSCVPVSKDEDGLVVLVLNKKEADVRAQQQQLVESLHKVLGSNQTLTV
NVDGVKALPSDQTEVIIYVVERSPNGTSKRIPATTLFSYLEQTNIKVQLTQIGVAMSVTR
TELSPTQLKQLLQNAPAGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELLRRLQIQEQMTK
QHQTRVDIISNDISELQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQV
DEEHLRVQLDTIQSELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYSVDADLLREIKQ
HLKQQQDGLSHLISVIKDDLEDIKLIEHGLSDSGHLRGGILS
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcagttttggcggcgccgcgagcaacacagcggcaggcacgtccgggttctca
tttggttcatttggtgccaacaaaaccacagcgtcaacagcgtttggcttcgcccccgca
gccaccaccaccaccgcctcatccggattcggcactcttacagctcctggttttggggca
accaccaccactgctgctgcaccagccacaggatttagttttggctccaccaatactgga
tttggggggctaggagctggaagcaccacggctggcacattcggtggctttgggacaaca
acaacaactgctgctgcaccgggctccacttttagctttgctgccccctccaacaccaca
ggaggcctgtttggtaacacgcagaacaaagggtttggattctcgtctgggctcggcaca
ggggctgctgccgggacatcaggatttggaactggattaggaacaactggcctgggtggg
tttggaggttttaatatccagccaactcagcagcagcaaggaggcttgtttggccaacag
gcccagcagcagggtcaggctcagcccacccagctttaccagcaggtcaccgctctgtca
gctcccactttgttaggcgacgagcgagactccatccttgccaaatggaaccagctgcag
gcgtactggggcaccgggaagggctactacagcaacaacaacccgcctgtggactttacc
caggagaacccgttctgcaggtttaaggcggtgggctatagctgcgtcccagtgagtaag
gatgaggatggtttagtggttttggtactcaataaaaaggaggctgatgtgagagctcag
cagcagcagctggttgagtcgctgcacaaagtcttgggaagtaaccagacactcactgtg
aacgtagacggtgtcaaagccctgcccagtgaccagacagaggttattatttacgtggtg
gaacgttctcctaatggaacctccaagcgcatccctgctacgacactcttcagctacctg
gagcagaccaacattaaggtccagctcacacagattggagtggccatgtcagtcacacgc
acagagctgtccccaacgcagctcaaacagctgctgcaaaatgctccagcaggagtagat
cccatcatttgggagcaggctaaggtggacaaccctgacccagaaaagttaatcccagtg
cctatggtgggtttcaaagagttactccgcaggctgcagatccaggagcagatgactaaa
cagcaccagaccagagtggatattatctccaatgacatcagtgaactgcagaagaaccag
gcgactacagtggctaagattgcccagtacaagaggaagttgatggatctctctcacagg
gtgctgcaggtgctgatcaaacaggagatccagaggaaaagtggttacgcaatccaagtg
gatgaggagcatctcagggtgcagctggacaccattcagtctgaactcaatgcccccaca
cagttcaagggtcggttgaatgaattaatgtcccaaatccggatgcagaaccactttgga
gccgtgagatccgaagaacgctacagtgtcgatgcagaccttctcagagaaatcaaacaa
cacttgaaacagcagcaggatggtttaagtcatttgatcagcgtcattaaagacgacttg
gaagacatcaaacttatagagcacgggctgagcgacagtggacacttgagaggaggcatc
ctgagctga
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