Amphiprion ocellaris (clown anemonefish): 111576375
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Entry
111576375 CDS
T06018
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03008
Ribosome biogenesis in eukaryotes
aoce03013
Nucleocytoplasmic transport
aoce03015
mRNA surveillance pathway
aoce05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111576375 (nxf1a)
03015 mRNA surveillance pathway
111576375 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
111576375 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
111576375 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111576375 (nxf1a)
03009 Ribosome biogenesis [BR:
aoce03009
]
111576375 (nxf1a)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111576375 (nxf1a)
mRNA cycle factors
Stress granule specific factors
111576375 (nxf1a)
Ribosome biogenesis [BR:
aoce03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
111576375 (nxf1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_NXF2
LRR_4
UBA_8
RRM_NXF1-2
LRR_8
LRR_9
Citrulline_exp
DUF8346
Motif
Other DBs
NCBI-GeneID:
111576375
NCBI-ProteinID:
XP_023137783
Ensembl:
ENSAOCG00000016998
UniProt:
A0AAQ5Y6N8
LinkDB
All DBs
Position
13:complement(15982469..15994152)
Genome browser
AA seq
634 aa
AA seq
DB search
MADGGHYYNEHDDRTAPQFRNRKNRGSHKGRSTYDRSRRDRQRGSHSGGFGGPGPRARLD
DTDGDVTMSDGSQDNSSRHRYNPYGNFRKGDGRFDRDRRQGKGGGGGRGGGFRGDRGGGG
SGGGPGKNRSDWYKITIPHGRKYDKKWLLSALQNICTAQFTPVQYHVDHNRVHFYVDDSS
AASALHKCSHKITDTDGYKVEVHVNNVPPPAFLQSDLKPEHLEHLKQCMAKRFDGSQQAL
DLNNIRTDPDLVSQNIEVILNRKTNMEAVIKIIEENIPELAGLNLSNNRIHKLDELTELV
SKVPNLKTLNLSHNELKSDRELDKVKGLKLVELWLNRNPLCDLFKDQASYISAVRQRFPR
LLKLDGHDLPPPIGFDVETPTTIPPCKGSCFGSDEIKAHILRFLQQYYSIYDSGDRQPLL
DAYHDGASLSLTTPYSTQNPSRSSLGEYHKDSRNLKRIKDSTMRFRLLKHTRLNVVAFLN
ELPKTQHDIASFTIDVNTYTNTLLSFTVSGVFKEVVVDGKSRESTMAFSRVFITVPAGNS
GLCVVNDQLFIRMATTEEIRRAFVAPAPTPSSSPVPTLTAPQQEMLTAFSLKSGMNLEWS
QKCLQDNEWDFNRAAQIFTQLKTEGKIPDVAFIK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggcgggcattactacaacgagcacgatgatagaactgcaccgcagtttcgc
aaccgtaaaaacagaggctcccacaagggtcggtcaacatatgacagatcccgaagggac
cgtcagcgaggaagccactcaggagggtttggaggtcctgggccacgggctaggcttgac
gatactgatggagatgtgacaatgagtgatggctctcaggacaacagctcgcggcacaga
tacaatccgtatggaaattttcggaaaggagatggacggtttgacagagacagacgacaa
ggcaaagggggaggtggtggtagaggaggcggcttcagaggagaccgaggtggaggaggc
agcggtggaggaccagggaaaaacagatcagactggtacaaaatcacgataccacacgga
agaaaatatgataagaaatggttactctcagctcttcagaacatctgtacagctcaattc
acacctgtacagtatcatgttgaccataacagggtccatttttatgtggatgattcctct
gctgccagtgctttgcacaaatgttcccacaagatcacagacacagatggttataaggtg
gaagtgcatgtcaataatgttcctcctccagcttttctgcagtctgacctgaagcctgaa
cacttggagcacctgaagcaatgcatggcaaaacgttttgatggctcccagcaagcactg
gacttaaacaacatccgaacagacccagatctagtttctcagaacattgaagtcatcttg
aacaggaagacaaacatggaagctgtgatcaagatcattgaagaaaacattcctgagctg
gctggcttgaacttaagtaacaaccgcattcacaaactggatgaactcactgaattggtt
tccaaggtgcctaatctgaagaccctcaacctttcccacaatgagctgaagtcggaccgg
gagctggacaaggtgaaaggcctgaagctggtggagctgtggctgaacagaaaccctttg
tgtgacctcttcaaggaccaggcgtcatacatcagtgctgtgcggcagaggtttccccgg
cttctcaaactggatggccatgatctccccccacccattggattcgacgtggaaacaccc
accactatccccccctgcaagggaagctgctttggctctgatgaaatcaaggctcacatc
cttcggttcctgcaacagtactacagcatatatgactcaggagacagacagccactcctg
gatgcttaccatgatggagcatcgttatccctcacaacaccttactccacccagaacccc
tccagaagcagtctgggggagtatcacaaagacagtcgaaacctgaagaggattaaagac
tccacgatgcggtttcggctgctgaaacacacgcgactcaacgtggtggctttcctcaat
gagttgccaaaaactcaacacgatattgcctcttttaccattgacgtgaacacctacaca
aacacactactatcgttcacagtgagtggagtcttcaaagaagttgttgttgatggtaaa
tcccgagaatccacaatggccttctctcgagttttcatcacagtcccggcaggaaattct
gggctgtgtgtggttaatgaccagcttttcatccgaatggccacaacggaggagatccgc
cgagccttcgtggctcctgcaccaactccatcttccagccccgtccccaccctcaccgca
ccacagcaagagatgctcacagccttctcactgaagtcaggcatgaacttggaatggtcg
cagaagtgtctgcaagacaatgagtgggatttcaacagagcggcacaaatcttcacccag
ttaaagacggaaggcaagatccctgacgtagcgttcataaaataa
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integrated database retrieval system
