Amphiprion ocellaris (clown anemonefish): 111577343
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Entry
111577343 CDS
T06018
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111577343 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111577343 (ddx6)
03036 Chromosome and associated proteins [BR:
aoce03036
]
111577343 (ddx6)
Enzymes [BR:
aoce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111577343 (ddx6)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111577343 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
111577343 (ddx6)
Chromosome and associated proteins [BR:
aoce03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111577343 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
111577343
NCBI-ProteinID:
XP_023139343
Ensembl:
ENSAOCG00000022849
LinkDB
All DBs
Position
7:complement(31193803..31207669)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQPRGSVKPAGAPGGGGGGPQQQQFNQMKGTINNGNSQPAPT
TNAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQALVIVPTRELALQVS
QICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQ
MIVLDEADKLLSQDFVVMMEEILGFLPKQRQILLYSATFPLSVQKFMNAHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEV
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgccaggacagagaacccggtgattttgggcttgtccaaccagaatggacag
cccagaggctctgtgaaacctgctggagcaccaggtggaggtggaggaggccctcaacag
cagcagttcaaccagatgaaaggcacaatcaacaatggtaattcccagccagcccccaca
acaaacgctgtcatcaaacctggagatgactggaagaaaaatttgaaattacccccaaag
gacatgagaatgaaaacttcggatgtgaccgcaactaaaggcaatgagtttgaagattat
tgcctaaagagggagcttctcatgggaatctttgagatgggctgggaaaagccatctcca
atccaggaggaaagcattcccattgcactgtcaggaagggatattttggccagagccaag
aacggcacgggaaagagtggagcctacctcattcccttacttgaacgcattgacctgaag
aaggactgcatacaagctttggtcatagtgcccaccagagaactggctctgcaagtaagc
caaatatgtatccaggtcagcaaacacatgggtggagtgaaggtaatggcaaccacaggt
ggaaccaacctccgtgacgacatcatgagactcgatgaaacggtacatgtggtcattgct
actcctggaaggattttagacctcatcaagaaaggagtggccaaagtcaatcaagtgcag
atgattgttctggatgaagctgacaaactcctgtctcaggactttgtagtcatgatggag
gagatactgggcttcctgcccaaacagaggcagattttgctttattctgcaaccttccct
ctcagcgtgcagaagtttatgaatgcgcacctgcagaagccctatgagataaacctaatg
gaggagcttacactgaagggtgtgactcagtattatgcttatgtaactgaaaggcaaaaa
gtccattgccttaacaccttgttttccaggctccagatcaaccagtctataatcttctgc
aactcctctcagagagtggagctccttgccaagaagatctcccagcttggctattcatgt
ttctacattcatgccaagatgagacaggaacatcgcaaccgtgtgttccacgacttcaga
aatggcctgtgccggaatcttgtctgcactgacctcttcacaagaggaattgacattcag
gctgtgaatgttgtgatcaattttgactttcccaagctgggagaaacataccttcatcgc
attggtagatccggccgctttggacacctgggtctcgccatcaacctcatcacatacgat
gatcgcttcaacctgaaagggatcgaggagcagcttggaacagagatcaaacccatccct
ggcatcattgacaagagcctatatgtggcagagtaccacagcgagagcggcgaagaagtc
aagccataa
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