KEGG   Amphiprion ocellaris (clown anemonefish): 111577604
Entry
111577604         CDS       T06018                                 
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aoce00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111577604
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aoce03019]
    111577604
Messenger RNA biogenesis [BR:aoce03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     111577604
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta EIF3I Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT122_1st eIF2A Beta-prop_Vps41 WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR11_2nd Beta-prop_DCAF4 Beta-prop_WDR41 Ge1_WD40 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 111577604
NCBI-ProteinID: XP_023139717
Ensembl: ENSAOCG00000011914
LinkDB
Position
10:36760451..36785250
AA seq 1089 aa
MATDIGSPQRFFHMPRFQHQAPRQVFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGMLNNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
TGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDVEPNSVAAIPGMGIPEQLKAAMEQEQISKEAAPEVEMSIPGLDWGMDE
VMGKDAKKVPQKKVPYAKPIPAQFQQAWAENKVPMMPPSGDLSKDRKVEQKVETKKKTQA
EIEQEMAALQYTNPMLLEQMKMDRMNQMNNDGNMGPSQSQGSMGPFPGPGGPMPPGQQGF
PPNMPPQQMSNNMGPPMGPGGMQSPFMPPGQVGPSSGPQSHQGPPQGMMGPPDMQGPQGM
QRHPGPPRNMGPQGPHSMGPRGMQGPPGGMMGPPPRGMGPRDPQGPPPQGGMMPPQGNMM
GPQGPMQGGMMGPPTRTHGNMPNNYGMGNMQGPPGGIHGTPGNMQGPHGNMQGPHGNMQG
PHGNMQGPPGNMQGPHGNMQGPPYLQHQGQNTGPMMHGMGQQGPSSKGDPRGPPPNHHMG
PPDRQGPGGPDQGSGPYWGDNQQSRRGPQDFDGGQDFHGRADEGWRPGYQGGAGGHRGAG
PRAGGNGGSWGPDERFTGGEFRGRRDDRFRGGGPGRPGGRCYADDYSGQEEVFDGPEETG
RGWDSGGRGRPPRGGGPLRGGGHDGYRDGQQMHDGSSPAGRERSSSLQGMDMASLPPRKR
PWQDGPGTGDLRERESPGADGGRLSQREDGGYGPSGRSGRGGWGPGGPPGPRRGGPPPRG
VPRGGVRGR
NT seq 3270 nt   +upstreamnt  +downstreamnt
atggcgacggacatcggctcgccgcagcggttcttccacatgccgcgcttccagcaccag
gcgccccgacaggtgttctacaagaggccggacttcgcccagcagcaggccatgcagcag
ctcaccttcgatgggaagcgcatgaggaaggccgtgaaccgcaagaccatcgactacaac
ccctctgtcatcagatacctggagaaccgactgtggcagcgggaccaccgagacttcaga
gccattcagcccgatgctggctgctacaacgacctcgtccctcctgtcggcatgctgaac
aaccccatgaacgccgtcactaccaagttcgtccgaacctccaccaacaaagtcaagtgt
ccagtgttcgtcatcaggtggactcctgaaggccgccggttggtgaccggagcctctagt
ggagagttcactctgtggaacggactcaccttcaactttgagaccattctccaggcccac
gacagtccggtgcgggcgatgacgtggtctcataatgacatgtggatgctgacggcggac
catggcggctatgtcaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggccattagagaagccagtttctctccgactgataataaattcgccacctgc
tcagacgacggaaccgtcaggatttgggactttctgcgctgccatgaggaaaggatcctg
agaggtcacggtgctgacgttaagtgtgtcgactggcatccaaccaaaggcctggtggtg
tcgggcagcaaggacagccagcagccaatcaagttctgggacccgaaaacgggacagagt
ctggcgacgctacacgcccacaagaacactgtgatggaggtgaagtggaacctcaacggt
aactggctgctgacagcgtcacgggatcacctgtgcaaactgttcgacatcagaaacctg
aaggaggagctgcaggtgttcagaggacacaagaaggaggccacagctgttgcctggcat
cccgtccatgaaggtctgtttgccagcggaggttctgatggttctctgctgttctggcac
actggtgtggagaaggaggtgggagggatggagatggctcatgaggggatgatctggagt
ctggcctggcacccactgggtcacatcctctgctccgggtccaacgaccacaccagtaag
ttctggaccaggaatcgaccaggtgacaagatgagagaccgttacaatctaaacctgctg
ccggggatgtccgaggacggcgtggagtacgatgacgtggagccgaacagcgtagcggcg
atacctgggatgggaatccctgagcagctgaaggctgccatggagcaggagcagatcagt
aaagaggcggctcctgaggtagagatgtccatcccaggactggactggggcatggatgag
gtcatgggcaaagacgccaagaaggtccctcagaaaaaagtcccgtacgccaaacccatc
ccagcacagttccaacaggcctgggccgagaacaaagtccctatgatgcctccttctgga
gacctgtccaaagaccggaaggtggagcagaaagtagagacgaagaagaagactcaggcg
gagatcgagcaggaaatggcagcactgcagtacaccaaccccatgctgctggagcagatg
aagatggaccggatgaaccagatgaacaacgatgggaacatgggcccctcccagagtcag
ggctccatgggccccttccctggccctgggggccccatgcctcctggacagcaggggttt
ccccctaatatgcctccacagcagatgtccaacaacatggggcccccaatgggccccgga
ggcatgcagtctccattcatgcctcctggtcaggtggggccctcctctggaccccagtct
caccaggggccccctcagggcatgatgggaccaccagacatgcagggaccccaaggtatg
cagagacatcctggtcccccaaggaacatgggtccgcaagggcctcacagtatgggaccc
agagggatgcaggggccccctggagggatgatgggcccccctcctcgaggaatgggtcct
agggatcctcaggggcccccacctcaggggggcatgatgccacctcaggggaacatgatg
ggcccccagggtcctatgcagggtgggatgatggggcccccaaccaggacacatggcaac
atgcccaacaactatgggatgggcaacatgcaggggcccccaggagggattcatggcacc
ccaggaaatatgcagggaccccatggaaatatgcagggaccccatggaaatatgcaggga
ccccatggaaatatgcagggtccccctggtaacatgcaagggccccatggaaacatgcag
gggcccccgtatttgcagcaccagggccagaacacggggccaatgatgcatgggatggga
cagcaggggcccagcagcaaaggagaccctcgggggccaccgcccaaccaccacatgggc
cctcctgaccggcagggccccgggggaccggaccagggctcggggccctactggggggac
aaccagcagagcaggagaggaccgcaggactttgacggaggacaggacttccatggccga
gcagacgagggctggagacccggataccagggaggagccgggggccacaggggagccggg
ccccgggccggggggaacggaggcagctggggccccgacgagaggttcaccgggggagag
ttcaggggccgcagggacgacaggttccgaggaggcggtccgggtcggcctggaggtcgg
tgttacgctgatgactacagcggccaggaggaggtcttcgacggccccgaggagacggga
cgaggctgggacagtggaggacgagggagaccacctcgaggaggaggtcctctgagagga
ggaggtcacgatggttaccgcgacgggcagcagatgcatgacgggtcgtctccggctggt
cgagagcgttcttcgtccctgcaggggatggacatggcatctctgcccccccgcaagcgt
ccatggcaggacggaccagggacaggagacctccgagagagagagtcccccggagctgat
ggaggtcgtttgtctcagagggaggacggcggttacggtccgtccggtcgcagtggacga
ggcggctggggtcctggaggcccccccggaccccggcgaggaggacccccacccagagga
gtgccgaggggtggcgttcggggccggtag

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