Amphiprion ocellaris (clown anemonefish): 111577923
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Entry
111577923 CDS
T06018
Symbol
smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111577923 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111577923 (smg5)
03032 DNA replication proteins [BR:
aoce03032
]
111577923 (smg5)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111577923 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
111577923 (smg5)
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
111577923 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
111577923
NCBI-ProteinID:
XP_023140218
Ensembl:
ENSAOCG00000019483
LinkDB
All DBs
Position
9:complement(13540259..13562236)
Genome browser
AA seq
1123 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDA
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPPPKHGGPHHSPSEEDEEQQQHTDSTCPVLPDTLIF
KMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEAESQVPPLHTD
AADDLDMRDSSAPLPDPSNERPLQNGSLEQEDEEGKDEGGCERVGTKKHTNVEEQHKMEE
EKQRQKKKYTRLSRLRRRRCARKDARGEDESDLSEGFESEDDEEEDEERRSRADSTGGTT
TETPLNPSSVRKESKRDPLGEEGSWGSGSEEEEEEGGTAFDVETDSDMNSQESRSDLEDI
EDTENSDNLEGQAREHQDEEEDEDQPKEGGGERDGDTPPTTNGPLAPSDSSISSNLQAMS
SQLFQAKRCFRLAPTFSNMLLRPQASSSSGIPTPTDTSAPPSQETPPPPGDSSCDMNPGT
ANGTNENDLDSDSEGSQHSTQSVHSEKTLLEKLEILTNQGLIQVVKVFVDWLRTNTDIIL
MCAQSSQSLWNRLSVLLNLLPDGSKMLEAELGLNAEVTELLNECEQPGLVQSLLLPEDLA
LRHLPALNVAHRRLDFSRRNPSLSPLQECVVRVCCIRSFGHFLTNLQGNVLHFNPEAGIF
TSISQSEQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSSM
SPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENAGARDGIRFLESEF
RKGNRYIRCQKESGRSFERDKLKRQDIEAWHLYKMVDSCRQLTVSQSNGDEDTAGMVTIL
TGHQVEELCTQSAAMKAAIQAAGSAGMELKNIVEFYRQWKEIG
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccagggcaggacagcgagccagaggcgaaagtccttctcatcaagcggctt
tacagggctgtggtggagtctgtgcacaagctggatgtcatcatcggcagcaaatcatcc
tacagagaggtcttcaagccagagaacatcagccttcgcaacaagctaagggagctttgt
gtgaaattgatgtttcttcaccctgttgactatggccgtaaggctgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagaccaacaagaagcacatccacagt
cgcagtgctctggagtgcgcctacagaacacatcttattgcaggagtgggtttctaccaa
cacctgctgctctacatccagtcgcattaccagctggagctgcaggactgcatcgactgg
actcacgtcacagatccactaatcggccgaaagaaacccgtgtcagccacccccaaagag
atggagtgggcacagatggcctgtcatcgctgtctggtctaccttggagatctagcacga
taccagaacgaacttgcaggagtggaggctgagcagctggcagagaggttttaccatcag
gccctgtctgttatgcctcacgtaggaatgccttttaatcagctgggcacacttgcaggc
agcaaattctacaatgtcgaagcaacatactactacctacgctgcatccaatcagatgcc
ccctttgagggtgcctatggcaacctcaagcgcctgtttgacaaagcagccaagatgtac
caccaagtgaagaagcaagaaatgaaaaagctgtctccatctcggcaaagatccaaagac
attaagcgcctcctggtgagcttcatgtacctccagagcctgctgcagcccaagaacagt
ctgatggagacggagctgacctcactgtgtcagtcggtgctggaggacttcaacctggtc
ctgttctacctgccaccgccaaaacatggtggtcctcaccactcacccagcgaggaagat
gaggagcagcagcagcacactgacagcacctgtcctgtactgcctgacaccctcatcttc
aagatggtggtcacatgtctgatggtggtgcacagccttaagagaggaggatcgaagcag
tacagtgcgtctatagcttttactctggccctcttctcccaccttgtgaaccatgttaat
atcagactgcaggctgaactggaggaagcagagagccaggtgcctccacttcacactgat
gctgcagatgacctggacatgagggattcatcagctccactgcctgatccgtcgaatgaa
aggcctctgcagaatggatccctggagcaagaggatgaggagggcaaggatgaaggtggc
tgcgagagggttggcaccaaaaagcataccaatgtggaagaacagcacaagatggaggaa
gagaaacagaggcagaagaagaaatatacccgcctttctcgactccgccgtcgccgctgt
gctcgcaaagatgcccgaggagaggatgaaagcgacctgagcgaaggcttcgagagtgaa
gatgatgaagaggaagatgaagagaggaggagccgtgctgattcaacaggtgggaccacg
acagaaaccccactgaatccttcatctgtcaggaaagaatctaagagagaccctttgggt
gaggagggcagctggggaagtggctctgaggaagaagaggaggaaggcggaacagcattt
gatgtggagacggactcggacatgaacagccaggagtcccgctcagatctggaagacatt
gaggacacggaaaactctgacaacttggagggtcaagctcgggagcaccaggatgaggag
gaagatgaagaccaaccaaaggaaggaggaggagagagggatggtgacaccccaccaacc
accaacgggccccttgcacccagcgactccagcatcagcagcaacctccaggccatgtct
tctcaactcttccaggcaaagcgctgcttccgcctggcaccgaccttcagcaacatgctg
ttaagacctcaagcttcctcttcttcgggtattcccacccctactgacacctctgctcct
ccctcccaggagactcctcctcctcctggggattcatcctgtgacatgaatcctggtacg
gccaatggaaccaatgaaaacgacttggactctgattcggagggcagtcaacacagcact
cagtcagtacatagtgaaaaaaccctgttggagaagctggagatcctgaccaatcagggg
ttaatccaggtggtgaaggtctttgttgattggctgaggacaaacacagatattatcctc
atgtgtgcacagagttctcaaagcctgtggaaccgactgtctgtgctgctcaacctgtta
ccagatggcagcaagatgctcgaggcggagcttggtctgaatgcagaggtgacagagttg
ttaaatgagtgtgagcagccgggtttggtccagagtcttctgctgcccgaggatctggct
ctgcgacacctgcctgctctcaacgtagctcaccgacgccttgatttttctcgtcgtaac
ccctccctcagtcccctacaggagtgcgtggtgcgagtgtgttgtattcgcagttttggc
cacttcctaacaaatctccaaggcaacgtgctgcacttcaacccagaagcaggcatcttc
accagcatcagccagtccgagcaggataatctggtgcagcaggccaaggcccagttccga
atggctgaagaggaggctcgtcgaaatcgcttaatgagggatatggcccagcttcgacta
cagttggaggtgtcacagctagagggcagccttcagcagcctaaagcccagtcatccatg
tctccctacctggtgccagacacagctgctctctgccagcatctgaacctcatccggcag
ctggctggaagtggctgcttcatcatcatcatcccgcgaacagtgattgatggacttgac
aggttgaagaaggaaaatgctggtgcgagggatggaatccgcttcctggagtctgaattt
cgcaaaggcaacagatacatacgttgtcagaaagagtcgggtcgaagctttgaaagagat
aaactgaaacggcaggacattgaggcctggcatctctacaaaatggtggacagttgccgt
cagctaacagtctcccagagcaacggagatgaagatacagccggcatggtgaccattctt
acaggccatcaggtggaagagctttgcactcagtcagcagcaatgaaggcggcgattcag
gcagctggctcggcgggcatggagctgaagaacatcgtggagttctaccgtcagtggaag
gagattggctga
DBGET
integrated database retrieval system
