Amphiprion ocellaris (clown anemonefish): 111578101
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Entry
111578101 CDS
T06018
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce04510
Focal adhesion
aoce04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111578101 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111578101 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111578101 (col2a1b)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111578101 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
111578101
NCBI-ProteinID:
XP_023140467
Ensembl:
ENSAOCG00000002210
LinkDB
All DBs
Position
5:complement(33298462..33352237)
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEEDDQEDAFSCIQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQSPPIGVPGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGPRGARGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQS
GPMGPRGPSGPPGKPGDDGEAGKPGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGAKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPIGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GVQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEAGKSGEKGLAGAPGLRGLPGKDGETGPAGPPGPAGLAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAVGPAGGGGAQGPPGLQGMPGERGAAGIPGPKGDRGDIGEKGPE
GASGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPSGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDAGEDGPPGPLGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGGPGGAGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGAS
GPVGPTGKQGDRGESGAQGPAGPPGPAGARGMPGPQGPRGDKGESGEAGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGTNGLPGPIGPPGPRGRSGDT
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVHPKPSSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtttgtcta
ttagccgttgtgagatgtcaggaggaggacgaccaggaggatgcttttagctgtatacaa
gatggacagcgttatagcgacaaggacgtatggaagccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgctgctgaccagtctccaccc
attggagtacctggagctaagggtcagaagggcgaacccggagacattacagatgttgta
ggaccaagaggaccagctggcccaatgggcccaccaggagagcaaggaccccgtggagca
agaggagacaaaggagagaagggaagtcctggtccccgcggcagagatggtgagcctggc
acccctggaaaccctggaccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggtttcgacgagaagtctggcggcgcacaaatg
ggcgtgatgcaaggaccaatgggccctatgggacccagaggaccacctggccccaccgga
tcacctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacaatct
ggccccatgggtccccgtggcccctctggacctcctggaaaacctggagatgatggtgag
gctggcaaacctggcaagtcaggtgagcgtggaccttctggacctcagggagctcgtgga
ttcccaggaactcccggtctgcccggcatcaagggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggagctgttggtgctaagggcgaggctggtgctcctggagag
aacggcgctcctggaccaatgggacctcgcggtctgcctggtgagagaggacgtcctgga
cccagtggagctgctggagcacgtggaaatgacggtttgcccggccctgctggtccccca
ggccccattggtccctctggagctccaggcttccccggctctcctggtgcaaagggagaa
gctggacctactggtgctcgtggacccgagggagctcagggaccccgtggagagtctggt
actcctggatcatctggaccctctggagcttctggaaaccctggtactgatggtattcct
ggagctaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctcctgggcctcagggagcaaccggacctctcggacctaaaggaacatccgga
gacccaggtattccagggttcaagggagaggctggacccaaaggagaaattggacctgct
ggtgttcagggagctcctggcccacagggagaagaaggcaagcgaggaccccgaggtgag
cctggtgctgctggaccactcggacctcctggagagagaggatctcctggtaaccgtggt
ttccctggtcaagatggtctggctggtcccaagggagcccccggtgagcgtggaccctct
ggagccagtggtcctaagggtgccaacggtgaccccggccgtcctggagagtctggtctg
cctggtgccagaggtttgactggacgccccggtgatgctggacctcaaggaaaagttgga
ccttctggagctgctggtgaagatggtcgtcctggacctcctgggcctcagggagctcgt
ggacagcctggtgtgatgggattccctggacccaagggagcaactggtgaagctggaaag
tctggtgagaaaggactggctggagctcctggtctgagaggtttgcctggcaaagatgga
gaaactggccccgctggacctccaggccctgctggccttgctggagagagaggagagcaa
ggtcagcctggtccctctggctttcagggtcttcctggacctccaggcccccctggtgag
ggaggcaagcccggagaccagggtgttcctggagaggctggagcggccggtgccactgga
cccagaggagagcgtggtttccccggagagagaggagctgccggccctcagggtctgcag
ggacccagaggtcttcctggaactccaggaactgacggacccaagggagccgttggacct
gctggtggtggtggagctcagggaccccctggtctgcagggtatgcctggagagagagga
gctgctggcattcctggacccaaaggagacagaggtgacattggagagaaaggacctgaa
ggtgcttccggaaaagatggtgccagaggtcttactggtcctattggtccccctggtcct
ggtggtcccaacggtgagaaaggtgaatctggtcccgctggtccttctggtgcccctggt
acccgcggtgctcctggtgacaggggagaaactggacctcctggacctgctggttttgct
ggaccccctggtgctgatggtcagcctggaaccaagggagagcagggagaatctggacag
aagggagatgctggtgcccctggaccccaaggaccctctggtgccccaggacctgcaggt
ccaacaggtgtttctggacctaaaggtgctcgtggtgctcagggacctcctggtgccact
ggtttccctggagcagctggccgagttggaccccctggtcccaatggtaatcctggacct
tctggtcccgccggtccccccggtaaagacggacccaagggtgtgaggggagacggtgga
cccccaggcaggcagggtgacgctgggctccgtggacctgctggagctcctggagagaag
ggagacgctggagaggacggccctccgggtcctctaggtccttcaggtcctcaaggattg
gctggtacacgtggtattgttggtctccctggacagcgtggtgaaagaggtttccctggt
ctgcctggaccttctggtgagcccggaaagcagggaggtcctggtggcgccggcgaccgt
ggaccccctggacctgttggaccacctggactcactggacctgcaggagagcctggcaga
gagggcaaccccgggtctgatggacctcctggtagagacggtgctactggaatcaagggc
gatcgtggtaacaccggccctgcaggcgctcctggtgctccaggtgctcctggtgcttct
ggcccagttggtcccaccggcaaacagggagacagaggagagtctggtgcacaaggacct
gctggacctccaggacctgctggagccagaggaatgcctggaccccaaggaccccgtggt
gataagggtgagagtggagaggctggagagagaggacagaagggacacagaggcttcact
ggtctgcagggtctccccggacctccgggtcaagctggagaccagggtgccactggacct
gctggaccttctggacaacgaggaccacctggacctgttggccctgctggtaaagatggt
acgaacggtctacctggacccattggaccccctggacctcgtggtcgcagtggagacacc
ggtccagctggtccccctggaaaccccggaccccctggtcctcctggtccccccggtcct
ggcatcgatatgtctgccttcgctggtctgggtcagactgagaagtctcctgatcctctc
aggtacatgagggccgaccaggcttccggaaatctccgtcagcatgatgctgaggtcgac
gccactctcaagtctctcaacaaccagattgagaacattcgcagccccgagggatccaag
aagaacccagctcgcacatgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcccaatcagggctgcacagttgatgcaatcaaagtcttctgcaac
atggagacaggagagtcctgcgtccaccccaaaccttccagcatccctcgcaagaactgg
tggtcaagcaagagcaaagaccgcaaacatgtctggttcggagagacaatgaatggagga
ttccacttcagctatggtgacgacagcctggcgcccaacactgccgccatccagatgact
ttcctgagactgctgtccaccgaggcttctcaaaacctcacctaccactgtaagaacagc
gtggcctacatggacgcctccacaggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatcagggccgagggcaacagccgcttcacctacagcgtgatggaagac
ggctgcacgaaacacacgggacagtggggcaagacagtgatcgaatacagatcgcagaag
acctctcgtctgcccattgtggacattgcccccatggatattggcggagcagaccaggag
tttggagtcgatgtcggggcagtctgcttcttgtaa
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integrated database retrieval system
