Amphiprion ocellaris (clown anemonefish): 111578250
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Entry
111578250 CDS
T06018
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aoce04040
]
111578250 (scn1laa)
Ion channels [BR:
aoce04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
111578250 (scn1laa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
PFF1_TM
FUT8_N_cat
Neur_chan_memb
Zip
SieB
Motif
Other DBs
NCBI-GeneID:
111578250
NCBI-ProteinID:
XP_054871203
Ensembl:
ENSAOCG00000002473
LinkDB
All DBs
Position
11:complement(10004255..10033258)
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AA seq
1980 aa
AA seq
DB search
MEQLLVPPGPDSFRRFSRESLQAIEKRIAEEKAKKPKGEKRKRNDENELKPSRDLEAGKS
LPLLYRDIPAGMVSTPLEDLDPYYSNQKTFIVLNKGKFIFRFNAAPALYLLSPFNPLRRI
SIWILVHSLFSMVIMCTILTNCAFMTLSQPPEWAKNVEYTFTAIYTFESLVKILARGFCI
GKFTFLRDPWNWLDFCVIVMAYVTEFVPLGNFSAVRTFRVLRAFKAISVIPGLKTIVGAL
FQSVKKLADVMILTVFCLSVFALVGLQLFMGNLMQKCLRWPRNDTEETDDFTAYSLNEEN
YYFLPGKRDPLLCGNASEAGQCPEGFTCMKIGRNPDYGYTSFDSFGWAFLALFRLMTQDY
WENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLILAVVAMAYEEQSQATIKEEKEKEEE
FQAMLEQLKQQQEDAQAAASAAVAEGGETTDKVGGTESSSDASKLSSKSAKERRNRRRKR
KEEEGKGTEGKIPKSESQDSIKRARCRFSVDANLLNYDMKCSSAHQSFLSFRGPLFSPRR
NSKTSLFSFRSQVQDMGSENEFADDENSIFEDNLSRRGSLFFPQRCDRRSSSMSQCIFMP
RLRLPPSGIRHSSVDCNGVVSLVGGSSLPASPVGLLLPKVTVDMASTGDNADTTDTEYRH
ATGGTYQEFLDPFEGPEARQRAHSIASVITSTMEELEESRQKCPPCWYNFAHTFLIWECC
PLWLKIKKMVRLIVMDPFTDLTITICIVLNTLFMAMEHHPMSTGFSNMLTVGNGVFTAIF
TAEMVLKIIALDPYYYFQQGWNIFDSIIVSLSLMELGLADVAGMSVLRSFRLLRVFKLAK
SWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKKYKDCVCKISPECVLPR
WHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGTTKCIIVYMMVMVIGNLVVLNLFLALL
LSSFSADNLAATDDDSEMNNLQIAIGRIHKGIAFTKSLLRSCCSSVCLRGKKKKKDEDKA
LDELHKPLGPNGVANHLIKDFPKNGNGDVTGVDKNGDKYIVCSKSDDSIMSFINNPSLTV
TVPIAVGESDFENLNTEDFSSASSEVAACHMIVEDDGQFSSSEGSTVDGLPAGEGGDSLD
FELEEAMDPDACFPAACVQRFKCCQVNVDVGFWKIWWTLRKTCYRIVEHNWFESFIIFMI
LLSSGALALEDVYIEKRKTIKTMLEFADKIFTYIFILEMLLKWVAYGFAKYFTNAWCWLD
FLIVDVSLVSLIANALEFNELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIV
NVLLVCLIFWLIFSIMGVNLFAGKYYSCVNRTTDKPFLPTIVKNETECLALSNETVRWKN
VKINFDNVGMGYLALLQVATFKGWMDIMYAAVDSPSKQGDQPEYEKNLKMYVYFVVFIIF
GAFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNK
IQGYIFDFTTKQAFDIAIMVLIWLNMVTMMVETADQSPQKTEVLQKINVFFIVVFSGECL
LKVISLRQYYFTSGWNIFDFIVVILSVLGMFLSEMIKKYFVSPTLFRVIRLARIGRVLRL
IKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKRERGIDDLFNFET
FGNSMICLFQITTSGGWDGLLYPILNRHQDDCNSSKEHPGSTVVGDCGNPPVGIAFFVSY
IIICFLIVVNMYIAVILENFGVATEESADPLSEDDFEMFYEVWEKFDPRATQFMEYYKLS
EFADALDPPLRIAKPNKIELISMDLPMVSGERIHCLDILFAFTKRVLGEGGEMDILRGQM
EERFMASNPSKMSYEPITTTLRRKQEDTSAVVIQRAYRQYVKNSQGIGIRPSDMSNGNIQ
KDEKVIEKEDLAADKQKSELTPSAASQPSCNSVTTNGKNKYEKDKSEKEVESKDVTEEDI
NT seq
5943 nt
NT seq
+upstream
nt +downstream
nt
atggaacagctgcttgtgccaccaggtccagacagcttccgccgcttcagtcgtgaatcc
ctccaagccatcgagaaacggatcgctgaggagaaggccaagaagcccaagggagagaag
agaaaacgcaatgatgagaatgagctcaaacccagccgtgacctggaggcgggcaaatcg
ctccctctcctgtacagggacattcctgcaggcatggtgtcgacaccgctggaggacctg
gatccatactactctaatcagaaaactttcatagtattaaacaaaggaaagttcattttt
cgcttcaatgccgctcctgccttgtacctcctgagccccttcaaccctcttagaagaata
tcaatttggattctggtacattcattgttcagcatggtgatcatgtgcactatcctcacc
aactgtgcatttatgacactgagtcaaccgcctgaatgggcaaagaatgtagagtacaca
tttactgcaatctatacctttgaatccctagttaaaattttagctcgggggttctgtata
ggaaaattcaccttccttagagatccctggaactggctggatttctgcgtcattgtcatg
gcgtatgtcacagagtttgtaccccttggcaatttttctgctgttcgcacgttcagagtg
ctgagagctttcaaagcaatttcagttattccaggcctaaagaccatcgttggtgcgttg
ttccagtcagtgaagaagcttgctgatgtaatgatcctcaccgtcttctgcttgagtgtc
tttgccctcgtagggttacaactttttatgggcaatttaatgcaaaagtgccttcggtgg
cctagaaatgacaccgaggaaacggacgacttcactgcttactcactcaatgaggaaaat
tattatttccttccaggcaaacgagatccattgctttgtggaaatgccagtgaagctggg
cagtgtccagagggcttcacctgcatgaaaatagggaggaacccagactatggttacacc
agctttgactcattcggttgggccttccttgccctgtttaggctgatgacacaggattac
tgggaaaacctttaccagcagacattgcgagcagccgggaaaccctacatgatctttttc
gtgctggtgattttcctcggctccttctacctggtcaacctgatcttggctgtagtagcg
atggcatatgaggagcagagccaggccaccataaaggaggagaaggagaaggaggaggag
tttcaggccatgcttgagcagctgaaacagcagcaagaggacgctcaggcagcagcatct
gcagctgtagcagagggcggggaaaccactgacaaagttggtggcactgagagttcctcc
gatgcatccaagctgagctccaaaagtgccaaagagagacgcaacaggagaagaaaaaga
aaggaggaagagggaaaagggacggaggggaagattcctaaatctgagtcacaggacagt
ataaagagggctcgctgccgcttctctgttgatgcaaacctgctcaactatgacatgaaa
tgctcatctgcacatcagtcctttctgagttttcgtgggcccctgttctcacccagacgg
aacagcaagaccagccttttcagtttccgaagccaagtgcaggacatgggttcagaaaat
gagttcgccgatgacgagaacagcatttttgaggacaacttgagtcggaggggctctttg
tttttcccccagaggtgtgatcgacggagcagcagtatgagccagtgcatcttcatgcca
cgtcttcggcttccacctagtgggatcaggcacagttcagtagactgcaatggggttgtg
tctctggtgggtgggagctcactgccagcatcaccagtgggcctccttctgcctaaagtg
actgtagatatggcctcaactggagacaatgctgatacgactgacacagagtacagacat
gccactggggggacataccaggagtttttggatccatttgagggcccagaggccagacag
agagctcacagcatagccagtgttattaccagcacaatggaggagcttgaagagtcaaga
cagaagtgtcctccttgctggtacaattttgcccacaccttcctcatctgggaatgctgt
cccttatggctgaaaatcaagaaaatggttaggctaattgtgatggacccattcacagat
ctcaccatcaccatctgtattgtactcaacactttgtttatggctatggagcatcatcca
atgtccactggtttcagcaatatgttaactgtgggcaatggggtattcactgccatcttc
acggctgaaatggtcctcaagatcattgctttggacccatattattactttcagcaggga
tggaatatttttgattcaatcattgtcagtttaagcttgatggagcttggtttggcagat
gtggccgggatgtctgttctgagatcattcagattgttgagagtattcaagttggctaaa
tcttggcccactctcaacacactcatcaaaatcattggtaattcagtgggggctttgggc
aatctgaccctagtgctcgccatcattgtcttcatctttgctgtggtgggcatgcagctg
tttggaaaaaagtacaaggactgtgtgtgtaaaatctctcccgagtgcgttctgcctcgt
tggcacatgaatgacttcttccattcattcctcattgtgttccgagtgctttgtggagag
tggatagagaccatgtgggactgtatggaggtggctgggactaccaagtgcatcattgtc
tacatgatggtcatggttattggaaaccttgtggtgctgaacttgttcttggccctgctg
ctgagctccttcagtgccgacaacctggcagcgacagatgatgacagcgagatgaacaat
ttgcagattgccatcgggcggattcacaaaggcattgctttcaccaagtcgctgcttcga
agctgctgcagcagtgtctgtctcaggggcaagaagaaaaagaaggatgaggacaaagct
ctagatgagctccacaaacctttagggccgaatggtgtcgccaaccatttgatcaaagac
ttccctaagaatggcaatggagatgtgaccggagtcgacaaaaatggagacaagtacata
gtttgcagcaagagtgacgattctataatgtctttcatcaacaatcccagtctgactgtc
actgttcctatcgctgtgggagagtctgactttgaaaatcttaacacagaagacttcagc
agtgcctcgtctgaagtagcagcgtgccacatgattgtagaagatgatgggcagttcagc
tcttctgaggggagcacagtagatggtctaccagctggagaaggaggagattctctagac
ttcgaattagaagaagctatggaccctgacgcctgctttcctgctgcctgcgtgcaaagg
ttcaagtgttgtcaagtaaatgtggatgtgggcttctggaagatatggtggacgctgaga
aaaacctgttatcggatagtggagcacaactggtttgagagcttcatcatcttcatgatc
ctgctcagcagcggagcacttgcattggaggacgtctatattgagaagaggaagaccatt
aaaacaatgttggagtttgcagacaaaatattcacctacattttcattctggagatgtta
ctgaagtgggtggcatatggatttgccaagtatttcactaatgcctggtgctggttggac
ttcctcattgtcgatgtctcattggtcagcctgatagccaatgctttagaatttaatgaa
cttggtcccatcaagtctctgagaaccctgcgagctctgaggcccctgagagccctgtca
cggttcgagggcatgagggtggttgtcaatgccctactgggagcaattccttccatcgtc
aatgtgctactggtgtgtctcatcttctggctcatcttcagcatcatgggcgtcaactta
tttgcagggaagtactacagttgtgtcaacagaaccaccgataagccttttcttccaaca
atagtaaaaaacgagacagagtgtttggctttgtccaatgaaactgttcgctggaaaaac
gttaaaatcaactttgacaatgtgggcatgggttaccttgcgctgttgcaagtggctaca
ttcaagggctggatggacatcatgtatgctgctgtggactccccaagcaagcagggagac
caaccagagtatgagaagaacctgaagatgtatgtttattttgttgtttttatcatattt
ggagcttttttcactctcaatctcttcatcggtgtcatcattgacaatttcaatcagcaa
aagaaaaagttaggaggtcaagacatctttatgactgaagagcagaagaaatactacaat
gccatgaaaaagctgggttcaaagaaaccacagaaacccattcctagaccatcaaacaag
attcaaggatacatctttgacttcaccacaaaacaagcatttgatattgcgattatggtt
ctaatatggctcaacatggtaaccatgatggtggaaactgccgaccagtcaccacagaag
accgaggtcctccaaaaaattaatgtatttttcattgtcgtcttctctggagagtgtttg
ttgaaggtgatctcacttcggcagtactacttcacaagtggctggaatatatttgatttc
atcgtagtgatcttatcagttcttggtatgtttctctcagagatgataaaaaagtatttt
gtctcacccaccttgttccgagtcattcgattggctcgcattggccgcgtcctccgcctt
attaaaagtgctaaaggaatccgcacactcttgtttgccttgatgatgtcacttcctgcc
ttgttcaacatcggccttttgctcttcttggtgatgtttatctatgctatctttggaatg
tcaaactttgcttatgtcaagagggaaagaggcattgatgaccttttcaattttgagaca
tttggcaacagcatgatctgtttattccagatcaccacctcgggaggctgggatggcctg
ctgtatcccattctcaacagacaccaagatgattgtaacagtagcaaggagcatcctggc
agtactgttgtaggagactgtggaaatcctcctgtgggaattgccttctttgtgagctac
atcattatctgtttccttattgtggtgaatatgtacattgcagtcattctggaaaacttc
ggtgtggcgactgaggagagcgcggacccattaagtgaggatgattttgaaatgttttat
gaggtctgggaaaagtttgaccctcgtgcaacgcagttcatggagtactacaagctttca
gaatttgcagatgctctcgacccgccgctgcgcattgccaagcctaacaagattgaactg
atctctatggatctacccatggtgagtggtgagcgcattcactgcctagacatcctgttc
gcattcacaaaacgtgtgctaggtgagggtggggagatggacattctaagggggcagatg
gaggagcgcttcatggcctcaaatccttccaaaatgtcctacgaacccatcactaccacc
ctccgccgcaaacaggaggatacctcggctgttgtaatccagagagcatacagacagtat
gtcaagaatagtcaaggaataggtattaggccctcagacatgtccaatggtaacattcaa
aaggatgaaaaggtcattgaaaaggaagaccttgccgcagacaaacaaaaaagtgaactg
actccctcagcggcctctcaaccttcatgtaatagtgtgacaacaaatgggaaaaacaaa
tatgaaaaggacaaaagtgaaaaggaggttgagagcaaagatgtcacagaggaagacata
taa
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