Amphiprion ocellaris (clown anemonefish): 111578398
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Entry
111578398 CDS
T06018
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X2
KO
K06823
collagen type XVIII alpha
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aoce04147
]
111578398 (col18a1a)
00535 Proteoglycans [BR:
aoce00535
]
111578398 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
aoce00536
]
111578398 (col18a1a)
Exosome [BR:
aoce04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111578398 (col18a1a)
Proteoglycans [BR:
aoce00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
111578398 (col18a1a)
Glycosaminoglycan binding proteins [BR:
aoce00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111578398 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
111578398
NCBI-ProteinID:
XP_023140952
Ensembl:
ENSAOCG00000025821
UniProt:
A0AAQ5X4R5
LinkDB
All DBs
Position
11:20167305..20253263
Genome browser
AA seq
1437 aa
AA seq
DB search
MTRTHFGVLFLLAQWVAYSDAWLWPWSRTTTLAPTVDPEGSGSPAGSGEAPSENIASVGP
EIIDEGHGLHNDVQTWGETTEAPRLTALPPTLPENERASEKGTAGISSRIIKPGNGTSSL
KEDSGVSLLQLIGDPPPSEITRVYGPDNMPAYVFGPNANTGQLARAHLPSPFYRDFALIF
NLKPTSDRGGVIFSVTDASQQIMYVGVKLSPVQGGNQNVILYYTEPDSQKSYEAARFLVP
SLRDTWTRFAIAVRDDKVMFYLNCDSDPQVMRIERSPDDMELEGGAGVFVGQAGGADPEK
FLGVIGELRVVGDPRAAERHCEEDEDDSDMASGDGSGFEETRPRKPDMEKHRWTTTPPSS
RPIQQPPLTRTEDVPIARETGPVGSKGEKGDRGMKGDRGPIGPKGEAGSGSSSRGGARGE
KGEPGEKGAKGSAGFGYQGKKGDQGPPGPPGPPGPPGSATEYSVGSDGSVDSRVPGPRGP
PGSPGPKGAPGEDGEPGDPGEDGKTGPEGPPGFPGTPGDPGARGEKGDRGEGQPGPRGPP
GPPGPPGPGFRSTFVDMEGSGFPDLESIRGLPGPPGPPGPPGPPGPSTGGTAGSSGAFGP
PGRDGAPGQPGLPGLPGTDGLPGAPGPKGEKGDSGELGLPGVVGAKGAPGDRGLPGPAGD
PGLAGLPGPIGPAGPPGPPGPPGPSYRVGFDDMEGSGGVFTNGLPGVRGPEGVQGPPGLP
GLPGKPGLPGIQGQKGSEGPTGRDGQPGLDGFPGPPGPKAEKGDKGERGEPGRDGTGLPG
PPGPPGPPGQVIYQTSDNFDGVAGRAGRQGGPGLPGQAGFPGPIGPKGDRGDPGPPGYAV
KGEKGEPGLVIGPDGNLLYLDGLSGPKGDRGLPGPVGPTGQYGPPGFKGEIGMPGRPGRP
GVNGYKGEKGEPGGGTGYGYPGVPGPPGPPGPPGPPGPATPIDRFHRYDDTSRNYPAIKG
EKGERGDRGLPGIPGTGSNFDIYTFKNELKGEPGDSGVKGEKGEPGGGYYDPRFGGVQGP
PGPPGNPGLPGPKGESIVGPPGPQGPPGSPGVGYDGRPGPPGPPGPPGPPASPSLPGPYR
PNPSVSVPGPPGPPGPPGSPGLSSGVTVLRSYDTMIATARRQAEGSLIYIIDRADLYLRV
RDGLRQVMLGQYSPFFRDLENEVAEVQPPPVILYPQSQDQSQNNGAGHYSQGGSAIRPLE
PPPHPPVDPRYPPQYDPRFPDQRHTGQTDGRLATQQTENRQPVTPTRRPSPPVPGPAASG
SALHLIALNAPQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRD
SFPIVNLKDQVLFSSWESIFGDNASKMRENTPIYSFDGRDILRDSAWPEKMVWHGSSNKG
HRQTDRYCETWRAGDRAVTGLASSLQSGHLLQQSSSSCSGSYIVLCIENALTSPSKK
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggacacactttggagttttgtttttgctggcccagtgggtggcctactctgat
gcttggctctggccctggtctcgcactacaactttggccccaacagtggaccctgagggg
tctggcagtccagcaggtagtggagaagcgccatcagagaatattgcaagtgttggacca
gagatcattgatgaaggacatggactccataatgatgtgcagacttggggtgagactact
gaggctcctcgactgactgctctacctccaacactaccagagaatgaacgtgcatcagaa
aagggcactgcagggatttcatcacgcataattaaacctggtaatggaacatcttctcta
aaggaagacagtggagtctccctgctgcagctgattggggatcctcctccaagtgagatc
acccgagtctatggaccagacaacatgcctgcttacgtctttggcccaaatgctaacacg
ggccagctggcacgcgcccacctcccaagcccattctatcgggactttgccctcatcttc
aacctgaagcccacctctgacaggggtggtgtcatcttctccgtcacagatgcctcacag
cagatcatgtatgtgggtgttaaactgtcacccgtgcagggcggcaaccagaatgtcatc
ttatactacacggagcccgactcacagaagtcctacgaggcagctaggttccttgtgccc
tccttgagggacacctggaccaggtttgctattgctgtgagggatgacaaggtgatgttc
tacctcaactgtgactcagaccctcaggtgatgcgcatcgagaggtctccagacgacatg
gagctggagggtggtgctggggtgtttgtcggacaagctggaggagctgatcctgagaag
ttcctgggtgtgatcggtgagctgagggtggtgggagacccccgtgctgcagagaggcac
tgtgaagaggacgaagacgactccgatatggcttcaggagacggaagtggctttgaggaa
accaggccacgaaaaccagacatggagaaacacagatggacgactacccctccatcttct
cgtcccattcagcagccacccctgacaaggacagaggacgtacccattgcaagagaaaca
gggccagtagggtctaaaggagagaagggcgacagaggaatgaaaggagataggggtcca
attgggccgaagggagaggcaggctctggctccagctcacgaggtggagcccgtggagag
aagggagaacctggagaaaagggagcaaagggcagtgcaggctttggctatcaagggaaa
aagggtgatcaaggcccacctggcccccctggtccccctggccctccaggatctgcaacc
gagtattcggttggcagtgacggctcagttgattcaagagtccctggaccccgaggacca
cctgggtcaccaggccccaagggagcacctggagaggatggagagccaggtgatcctggt
gaggacggaaaaactggccctgaaggacctccaggcttccctggaacaccaggagaccct
ggagccagaggagagaagggagaccgtggagaaggccaacctggccccaggggaccccca
ggacctccaggacccccaggacctggattcagatctacctttgtggacatggaaggttca
ggattcccagatttggaatctattcggggattgcctgggccacccgggcctcctggtcct
cctggtccacccggtccctctacaggtggcacagcagggagttctggagcatttggacca
ccaggaagggatggagcacctggacaacctggcttgcctggtttaccaggtactgatggc
ctccctggagctcctggtcccaagggagaaaagggtgattcaggtgagctgggtcttcca
ggagtagttggagcaaagggagctccaggagaccgtggtttaccaggacctgcaggagat
cctggactggctggtctgcctggaccaattggaccggctgggccccccggtcctcccgga
cctcctggaccaagttatcgtgttggatttgatgacatggaaggatctggtggggttttc
accaatgggcttcctggtgtcagaggaccagaaggagtacagggtcctcctggcctccct
ggactgccaggtaaacctgggttgcctggcatccaaggtcagaagggcagtgaaggtcct
acaggaagagacgggcagccaggcctggatggcttccctggccctccgggaccaaaggct
gaaaaaggtgacaaaggagagaggggtgaaccaggtcgagatggcactggactcccaggt
ccaccaggtccaccaggaccaccaggacaagtcatctaccagacatctgacaactttgac
ggtgttgctggcagagctgggcgtcagggtgggcctggtttacctggtcaagctggattt
cctggtcctattggaccgaaaggtgacagaggagaccctggtcctccaggctacgcagtg
aagggtgagaaaggtgagcctggcttagtaatcggaccagatggaaatcttctgtatctg
gacgggctgagtggtccgaagggagacagggggcttccaggacctgttggaccaactggc
cagtatgggcctcctggattcaaaggtgaaataggaatgcctggaagaccaggtcgccct
ggtgtgaatggatacaagggtgagaaaggcgagccaggaggtggtactggctatggctac
cctggagtccctgggccaccaggaccaccgggaccacctggaccccctggtccagccact
cctatagatcgattccatcgttatgatgacacttcaaggaattacccagcaatcaaagga
gaaaaaggagagcgtggtgatcgtggacttccaggaatcccaggaacaggctctaatttc
gatatttacacatttaagaatgaactaaaaggagagcctggagactcaggtgtcaaggga
gaaaagggagagcctggtggtggatattatgacccacgttttggaggagtacagggccca
ccagggccacctggcaacccaggtctaccaggtccaaagggagagtctatagtgggccct
cctggaccacagggacctccagggtcaccaggggttggatatgatgggcgtccaggtcct
ccaggaccacctggacctccaggacccccagcatctccatcacttccaggaccatataga
cccaatccctctgtaagtgtccctggacctcctggtccccctggcccacctggaagtcct
ggtctctcttctggggttacagttttgaggtcatatgacacaatgattgctactgccaga
cgtcaagcagagggcagcctcatctacatcatagacagagcagacctttatttgagagta
cgcgatggactgcgacaagtcatgctcggacagtacagtcccttcttcagagatttggag
aatgaggtggcagaagtccagcctccacctgtgattctgtacccccagtcccaggaccag
tcacagaacaacggagcaggccattactctcagggtggttctgccatacgaccgcttgag
cctccaccacacccacctgtagatcccagataccctccacagtatgatcccagattccca
gaccagagacacacaggtcagacagatggaagattagccacccagcagactgagaataga
cagcctgtgactccaacgcgacgacccagcccacctgtaccaggacctgctgcatcagga
tcagcactacacctcatcgccttgaacgcccctcaaactggtaacatgcggggaattcgt
ggtgcagacttcctgtgcttccagcaggctcgtgctgtgggtctgaagggaaccttcaga
gccttcctgtcctccaagcttcaagacctctacaccattgtccgcaggtcggacagggac
agcttccccatcgtgaacctcaaggaccaagtgttgtttagcagttgggagtctatcttt
ggtgacaacgccagcaaaatgagggagaatacacctatctactcctttgatggcagagat
atcctcagagatagtgcatggcctgagaaaatggtttggcatggatcaagcaacaaaggc
caccggcaaacagaccgctactgtgaaacatggcgggcaggcgaccgcgctgtaactggt
ctggcatcatcgctacagagcggccacctcctgcagcaaagctccagcagctgctccggc
tcctacatcgtcctctgcattgagaacgcactcacatcaccctccaaaaaataa
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