Amphiprion ocellaris (clown anemonefish): 111578472
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Entry
111578472 CDS
T06018
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
aoce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111578472 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
111578472 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111578472 (pabpc4)
03041 Spliceosome [BR:
aoce03041
]
111578472 (pabpc4)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111578472 (pabpc4)
mRNA cycle factors
Stress granule specific factors
111578472 (pabpc4)
Spliceosome [BR:
aoce03041
]
Complex C
Other components
Complex C specific factors
111578472 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
OB_RNB
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
111578472
NCBI-ProteinID:
XP_023141071
Ensembl:
ENSAOCG00000021529
LinkDB
All DBs
Position
20:complement(20046759..20056421)
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AA seq
626 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDDRLKELFDKYGKTLSVKVMTDPSGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPGSLRQPGPRSNLRHMTPGNTQGPRAAGQA
MAPRPSMGVPGPRAMPPYKYASGVRNPNPQVVQPIALQQAQPAVHVQGQEPLTASMLAAA
PPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAV
LQAHQAKKDATQKVGGMTTTAAAATS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagcgacggggagttatccgatggcttctctctacgttggcgacctgcaccca
gacatcaccgaggcgatgctgtacgagaaattcagccccgccggaccggtgctctccatt
cgggtctgcagagacatgatcacccggcgctccctcggatacgcttatgtgaacttctcc
cagccggctgacgccgagagagccctggacaccatgaactttgacgtggtcaaagggaag
ccaatcagaatcatgtggtcccaaagagacccctccctcaggaagtcaggtgtaggcaac
gtgtttatcaagaacctcgacaagtccattgacaacaaagccctgtacgacaccttctct
gccttcggcaacatcctctcctgcaaggtggtgtgtgatgaaaacggctccaagggctac
gccttcgtccattttgagacccaagatgcagctgatcgtgccatcgagaagatgaacggc
atgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgcaaagaacgggag
gctgaactcggcgccaaagccaaggagttcaccaacgtctacatcaagaactttggggat
gatatggatgatgatcggctgaaggagcttttcgacaaatacggtaaaacactcagtgtg
aaggtgatgacagatccctctggcaaatccagaggctttggatttgttagttatgagaaa
cacgaggatgctaacaaggctgtagaagacatgaatggcaccgaactcaatggcaagact
gtgtttgtgggcagagctcagaagaaaatggagcgacaggcggagctgaagaggaagttt
gagctgctgaagcaggaacggatcagtcgttatcagggagttaatctttacatcaaaaac
ctggatgacaccattgatgatgagaaactgcgtaaggagttctctccatttggatccatt
acaagtgctaaggtgatgctggaggagggccgttccaagggctttggcttcgtctgcttc
tcctcacctgaagaggccaccaaagctgttactgagatgaacggccgtatcgtcggctcc
aaaccgctctatgtggctcttgctcagcgcaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgtatagcaggcatgagggccatgccagctaatgccatcattaatcag
ttccagcccaccagcggctacttcatgccagccgtgccacaggcccagaacaggactaca
tactatgcacctaatcagctggctcaaatgcgtcccaacccacgatggcagcaacaaggt
ggaagaggtcaaggtggtttccagggaatccccggctcactgcgtcagccaggaccccga
tccaacctgagacacatgactcctggcaacactcagggcccacgagctgctggccaggcc
atggctcctcgtccctcaatgggggtccccggcccccgggccatgcctccttacaaatac
gccagtggtgtccgcaaccccaacccccaggtggttcagcccattgccttacagcaggct
cagccagctgtgcatgttcagggccaggagcctctcacagcctccatgctggctgctgca
ccgcctcaggagcagaaacagatgctaggggagcgtctgttcccactgattcaggccatg
catgccaacctggctggaaagatcactggcatgctgctggagatcgacaactctgaattg
ctccacatgctggagtctcatgaatccctgcgttcaaaggtagaagaagctgttgcagtg
ctacaggcccaccaggcaaagaaagacgccacccagaaagtgggcggcatgactactacc
gctgctgcagccacatcctga
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