KEGG   Amphiprion ocellaris (clown anemonefish): 111578715
Entry
111578715         CDS       T06018                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
aoce  Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03013  Nucleocytoplasmic transport
aoce03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aoce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111578715 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    111578715 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aoce03019]
    111578715 (thoc3)
   03041 Spliceosome [BR:aoce03041]
    111578715 (thoc3)
Messenger RNA biogenesis [BR:aoce03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     111578715 (thoc3)
Spliceosome [BR:aoce03041]
 Complex C
  Other components
   EJC/TREX
    111578715 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111578715 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_EML_2 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_Aladin Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_EML eIF2A DSE1_N Beta-prop_WDR36-Utp21_1st WD40_RFWD3 Beta-prop_NOL10_N Beta-prop_TEP1_C RMC1_N Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_HPS5 NBCH_WD40 Tricorn_2nd WDR90_beta-prop_4th Beta-prop_ACSF4 B-prop_COPA_B_2nd TRM82_WD Beta-prop_WDR75_1st PD40 Beta-prop_SPT8 PAC11 ASA1 Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 Beta-prop_WDR41 Peptidase_S9_N Beta-prop_NWD2_C Beta-prop_Nup120_160 WD_LRWD1 Cytochrom_D1 TP_0598_N Beta-prop_ELP1_1st Beta-prop_WDR11_1st DPPIV_N Beta-prop_SCAP PROPPIN YNCE Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 111578715
NCBI-ProteinID: XP_023141420
Ensembl: ENSAOCG00000013548
UniProt: A0A3Q1D440
LinkDB
Position
13:3238418..3243839
AA seq 322 aa
MASQYYQEMQESFRNNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVTTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcttcacagtactaccaagagatgcaggagagcttcaggaataacaacaaaagtcgg
gaattcccggctcacacagccaaagtccactcggtggcgtggagctgcgacggccggaga
ctcgcctccggttcttttgacaagacagcctccgttttcgtccttgaaaaggaccgtttg
gtgaaagagaacaactacagaggtcatggtgacagcgtcgatcagctctgctggcatccc
accaacccggatctgtttgtcacagcatctggagacaagaccattcgcatatgggatgtc
cgcaccaccaaatgcattgccactgtcaccacaaaaggtgagaacatcaacatctgctgg
agcccggatggtcagactattgctgtgggcaacaaagacgacgtggtgactttcatcgac
gccaagacgcatcgctccaaggcagaggagcagttcaagttcgaggtgaacgagatctcc
tggaacaacgacaacgacatgttcttcctcaccaacggcaacggctgcatcaatattctg
agctatccagagctgaagcccatccagtccatcaacgctcatccatccaactgcatctgc
atcaagttcgaccccacagggaagtacttcgccacggggagtgccgacgccctggtcagc
ctgtgggacgtggaggagctggtgtgtgtccgctgcttctccagactggactggccggtg
aggacgctgagcttcagtcacgatgggaagatgttggcctccgcctctgaggatcacttc
atagacatcgctgaggtggaaacaggagagaagctgtgggaggttcagtgcgattctccg
acctttacagtcgcctggcacccaaagcggccgctgctggcctacgcctgcgacgacaag
gaagggaagtacgacaacaaccgagaggcgggtactgtcaaactgtttggccttcccaac
gactcctga

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