Amphiprion ocellaris (clown anemonefish): 111579313
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Entry
111579313 CDS
T06018
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03013
Nucleocytoplasmic transport
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111579313 (casc3)
03015 mRNA surveillance pathway
111579313 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111579313 (casc3)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111579313 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
111579313
NCBI-ProteinID:
XP_023142324
Ensembl:
ENSAOCG00000016676
LinkDB
All DBs
Position
19:10356784..10371961
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AA seq
768 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSGRSSSPPTKARGREPDPAEPTAARPEAKSDVES
ECESEDGVGEAVLSDYDSADPEENGSHSEEEVNSVFPQGAEEEEEVEQYSDEEAPAAASE
PKPTSAATTGPTPGGEEEEEAEAEEEEAEGDGGGRSKEENKAEEKENLAGERQSGDGQES
TDDPETKAGGKPGQQLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDE
GRWEHDKFREEEQAPKSREELIAIYGYDIRNGGGAPGDRAFRQRRPRQSLSPSRDKRWRD
GDRPVRSWQAGPGGPTRGGAAPPSNIHPPSSSLLSAQRNSNPSRPPPSRSRPTHQNQHQN
QLHLQPQNQYRSTEPPQMHRDRPKAQSETAGERAGRGGRGGGSRGGPSVVVEDITVSSTA
EPDLSPAAVTTAASPQPGYQTASPRRQQQDQRGADRSGSAASSSDPSPQSSATPTNREAS
PPAERPVERKSYSAARRTRSRPADLGSKQTSVEESGAGGGASSPGSAGGKGWTGGDGPGQ
GGLTELDQDLTRLSLTRQSWSQSPTSYIRSEMRGIPNALHLPGGPPQFSSMDEMGVGSNR
AKRYSSQRQRAVPEPAPPIHLGVMEGHYYEPMSYQGPIYAHGEGPAPIPPQGMLVQPEMH
IPHPGLHPHQSGGPIANPALYGGPPVSLSPGQPQQLLPPPFYPPPGVMTFPYPTMYPNPQ
GQSQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTVKPPPPEVPFASE
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaggacagcgaggacgatgacgag
tccggttcgggttcggacagcgggaggtcgagctccccgcccaccaaagcccggggccga
gagccggacccggcggagcccacggccgcacggcccgaggcgaagagcgacgtggaatcc
gagtgtgagagtgaagatggcgtcggagaagctgttctctctgactacgacagtgcagat
ccggaggaaaacggatctcattcagaggaggaagtaaactctgtgttccctcagggggcg
gaggaggaagaggaggtagagcagtacagcgacgaagaggctccggcagctgccagcgaa
cccaagccgaccagcgccgccaccaccgggccgacgccaggaggggaagaggaagaggag
gcggaggctgaagaggaggaagctgaaggagacggaggaggacgaagtaaagaggagaac
aaagctgaggagaaagaaaacctggcaggagagaggcagagtggagacggacaggagtcc
acagacgatccagagacgaaggccggagggaaaccgggtcagcagctggacgatgacgag
gaccggaagaacccggcgtacatccccaggaaaggtctgttcttcgagcacgacgtccga
ggccacgctcaggaggaggagagacctaaaggcagaaacaggaagttgtggaaggatgaa
ggccgctgggagcacgacaagttcagggaggaggagcaggctccgaagagccgcgaggag
ctgatcgccatctacggatacgacatcaggaacggcggcggcgctccaggagatcgagcg
ttcagacagcgccgacccagacagagtttgtctcccagtagagacaagcgatggagggac
ggagaccgaccagtccggtcctggcaggctggaccaggaggtccgacccgaggaggagct
gctccaccttcaaacatccaccccccgtcttcctccctgctgtcggctcagcgtaactcc
aacccctccaggccgccgccctcccgcagcaggccgacccaccagaaccagcaccagaac
cagctgcacctccagcctcagaaccagtaccggagcaccgagccgccccagatgcaccga
gaccgacccaaagcccagtcggagacagcaggagagcgggcgggtcggggagggcgaggt
ggtgggtcgagaggaggtccgtctgtggtcgtcgaggacattacggtcagcagcaccgct
gaaccggacctcagcccggcagctgtgacgacagcggcgtcccctcaacccggataccag
acggcttcacccagacgtcagcagcaggatcagcgaggcgccgaccggtccggttcggcg
gcatcctcctccgacccctccccccagtcatcagctacaccgaccaatcgggaggcttct
cctcccgccgagcggccggtggagcggaagtcgtactcggcggcccgcaggactcggtcc
cggcccgcggacctgggcagcaaacagacgtccgtggaggagtcgggggccggaggtgga
gcctcgtcccccggcagcgcaggggggaagggctggacgggaggagacgggccgggccag
ggaggactgaccgagctggaccaggacctgacccgcctcagtctgacccgacagagctgg
agccagagcccgacgtcctacatccgctcagagatgagaggcattcccaacgccctgcac
ctccccggcggcccgcctcagttctccagtatggacgagatgggcgtcgggtccaaccgg
gccaaacgatactcatcccagcgccagagagccgttccagaaccggcgccgcccatccac
ctgggagtgatggagggacactactacgagcccatgtcgtaccaaggaccaatctacgct
cacggtgaaggccccgcccccatcccgccgcaaggcatgctggtccagccggagatgcac
atcccccaccccggtctccatccccaccaatcaggtggccccatcgctaaccccgccctc
tacggaggcccacctgtatctctgtcgccggggcaaccacagcagctgctgccgccgcct
ttctaccctccgccaggcgtcatgaccttcccataccccaccatgtacccaaacccacag
ggccagtcccaggtgacctatggaggtgtgacctactacgacacgatgcagcagcaggct
cagcccaagccttcgccgcctcgccgaacgtctcagcccgtcaccgtgaagcccccccct
cctgaagtgcccttcgcctcagagtga
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