Amphiprion ocellaris (clown anemonefish): 111579401
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Entry
111579401 CDS
T06018
Symbol
srsf5a
Name
(RefSeq) serine and arginine rich splicing factor 5a isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03040
Spliceosome
aoce05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111579401 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aoce03041
]
111579401 (srsf5a)
Spliceosome [BR:
aoce03041
]
Common components
Common spliceosomal components
SR proteins
111579401 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_5
Nup35_RRM_2
CDC45
OB_RNB
Motif
Other DBs
NCBI-GeneID:
111579401
NCBI-ProteinID:
XP_023142446
Ensembl:
ENSAOCG00000014967
LinkDB
All DBs
Position
20:25011570..25020789
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AA seq
293 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDHRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGMGRFGGSSSSYRPSRSSGSRYGPPVRTDHRLIVENLS
SRISWQDLKDLMRKAGEVTFVDAHRPNKNEGVVEFASRSDMKNAISKLDGTELNGRKLKI
FEDSRSHSKSRSRSRSYSRSKSRSRSRNRSRSRSRSRSRSISRTPEKKTSGGGKAGGRSP
SRSKSRSKSRSKSVSRSRSRSPAPAQDRQSRSRSRSRSRSRSRSRSASADSKH
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgagtggctgtcgtgtcttcatcggccgtttgagcccacacgccagagagagagacgtg
gagaagtttttcaaaggctatggaagaatccgggaaatcaacttgaaaaatggatttggc
ttcgtggaatttgacgaccacagagatgcagatgatgctgtgtacgagctgaatggcaaa
gaattgtgcagtgaaagggtcactattgagcatgctcggtccagaagaggaagaggcggt
ggccccggtatgggacgtttcggcggcagcagtagtagctatcgtccatctcgcagcagt
ggatccaggtacggccctcctgtgcgaactgaccacagactcattgtagagaacctgtcc
tcacggattagctggcaggacctgaaagacctgatgagaaaagcaggtgaagttaccttt
gtggacgctcacagacccaacaaaaatgaaggagtggttgagtttgcatctcgcagtgac
atgaagaacgccatctccaagctcgatgggacagagctgaacggacgcaaactgaagatc
tttgaggacagcaggagtcacagcaagagccgctctcgctctcgcagctactcccgctcc
aagagtcgatccaggagccgcaaccgctccaggagccgctccaggagccgctccaggtcc
atcagccggaccccagagaagaagacgtccggaggggggaaggccggaggcaggtccccc
tccaggtccaagtctcgctccaagtccaggtccaagtccgtctccaggtcccgctcgcgc
tccccggccccggctcaggacagacagtcccgttcacgttcccgctcccgttcccgatcc
cgttcgcgctcccgctccgcctcggcagacagcaaacactga
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