Amphiprion ocellaris (clown anemonefish): 111580485
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Entry
111580485 CDS
T06018
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111580485 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111580485 (smg7)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
111580485 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
111580485 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
111580485
NCBI-ProteinID:
XP_023144011
Ensembl:
ENSAOCG00000013538
LinkDB
All DBs
Position
10:33314045..33345184
Genome browser
AA seq
1195 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSNTSAIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLDKLDALREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDLTADGSEQSYSSEQQISWFQLLGLFMSFLGVMCSRVLLNKNRGEEIMGECP
LPAIKVSLDWLKLRPSVFHEAAVDKRQYIWPWLVSILNSFQPKEDDVSCSSVMPLPEEFE
LQGFLALRPALRCLDFTKGHQGILVDRDGLPVHTRHQRLISLGKWVADNQPGLIQCRVSE
DGLLVFITDIPEQAIEEPQEKEAPVLQESSNGEQMPNDGGNSGLKSVLSAGKTQSSWPDS
CDRPVVTFKENIKPREQSREPTRNHHQKDGSKERRDFSKGNGAVGKGELKRDGKRKSELK
KTGHEKVADAGKQVKAQTELRKTPVSEAKKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRP
GFPPSAYVIPPPVAFPGIQVNPGFTFSTGVSVPGPFLQPAVHTQAGTQVQAGKQSHIPYS
QQRPSGPGPGQGPGSSGQGPSQAQQPQAQPPSQQALQQSVQLQVQAMSQQQQSPTKPVQQ
VGMGKSPPHHPGLQQYMQVQDQPAQMWNQAQAALQKIPTMQMSMKQPQQQQQQQQQAFYM
AAQDPLKLYEHQLQPPAQPQLSNMDKKLKYPDVKMQDFYWEPSYRMGDGLAVMADRMKRP
PPGGMCSEQDGPRGPPFEDNKSSPLLPPDLLKTLADFEEEEELVFTKPPDFFQALAGPLS
TAPGPNIFLPNQTRMESGPEVVGQSSSLLPISGFPMQEYNQNSIFSQAYGKNLPPSSKPD
APMMHQEPSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAMPFS
NFGPIGTPDSRDRRVVDRWKADKTGAVSGFGLDYLPAAASSAASDTSWHQAGSTGSSWTN
QDSPMEESSSTVLLDSLKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatatctacgacaggcagaggccctgaaggcggacatgacagat
tcgaagctgggggcggcagaggtgtggacgtctcggcaggccctgcaggacctttaccag
aagatgctggtgacagacctggagtacgctctggacaagaaggtggagcaagacctgtgg
aaccatgcttttaagaaccagatcaccacgctgcagagtcaggccaagaaccgagccaac
cccaaccgcagcgaggtccaggccaacctgtcgctctttctggaggctgccagtggcttc
tacacacagttactgcaggagctgtgcactgtgttcaacgtggacctgccctgtcgcgtc
aagtcatcccagctcggcatcatcagcaataagcagagcaacaccagcgccatcgtcacc
ccacagcccagctcctgctcctacatctgccagcactgcctcgtccatctcggagacata
gcgcgttatcgtaaccagaccagccaggcagagtcttactaccgacatgcagctcagctg
gttccatcaaacggtcagccttataaccagctggccatcttggcctcctctaaaggagac
cacctcaccaccatcttctactactgtcgcagcatcgcagtcaagttccccttcccagca
gcctccaccaacctgcagaaggctctgtccaaggctctggagagtcgtgatgaggtgaaa
accaagtggagcgtgtctgatttcatcaaggccttcatcaagtttcatggtcacgtttac
ctgagtaagagtctggacaagctggacgctctgagggagaaactggaggagcagtttcag
aggctgatcctgcagaaagccttcagctctcagcagctggtccacatcactgtcatcaac
ctgttcgagctccaccacctgcgagacctgacagccgacggcagcgagcagagctacagc
agcgagcagcagatcagctggttccagctgctcggcctcttcatgtccttcctcggcgtg
atgtgcagccgtgtcctcctcaacaagaaccggggcgaggagatcatgggggagtgtcct
ctgccggccatcaaggtgtctctggactggctcaaactgaggcccagcgtcttccacgag
gccgccgtcgacaagaggcagtatatctggccctggctggtgtccattctcaacagtttc
cagcccaaggaggatgacgtgtcctgttcctcagtgatgcccctgccggaggagtttgag
ctccagggtttcttggctctccggcctgctctgaggtgtctggacttcaccaaaggacat
cagggcatcctggtggacagggacggcctgccggtgcacaccagacaccagagactcatc
agtctggggaaatgggtggctgacaaccagccggggctgatccagtgcagagtgagtgag
gacggcctccttgtcttcatcactgacattccagagcaggccatcgaggagccgcaggag
aaggaggcgccggtgctgcaggagtcgtccaacggtgagcagatgcccaacgacggtgga
aactcgggcctgaaatcggtgctgtctgcggggaagacgcagagctcgtggcccgacagc
tgcgaccggcccgtcgtcaccttcaaggagaacatcaaacccagagagcagagccgcgaa
ccgacacgaaaccatcaccagaaagacggcagcaaggagcgccgagatttctccaaaggc
aacggggctgttgggaaaggagagctgaagagggacgggaagaggaagagcgagctgaag
aaaaccggccacgagaaggttgcagacgctggaaaacaggtgaaggcgcagacagagctg
aggaagactccggtgtctgaggcgaagaagactcccgtcactcaaactcaaactacctgc
tcgtcccagttcatccccatccaccaccctggagccttcccaccactgcccagcaggccc
ggtttccctccatcagcctatgtgatccctcccccagtggcgtttccgggaatccaggtg
aatcccggcttcaccttctccaccggagtgtccgtccctggacccttcctccagccggcc
gtccacacccaggcaggcacccaggttcaggccgggaagcagtcccacattccctacagc
cagcagaggccgtcggggccggggccgggtcagggacccgggtcctcgggccagggaccc
tcccaggctcagcagcctcaggctcagccgccgtcccagcaggccttgcagcagtcggtg
cagctgcaggttcaagcgatgagtcagcagcagcagtcgccgaccaaaccggtgcagcag
gtcgggatggggaagagtccacctcaccacccgggactgcagcagtacatgcaggtccag
gaccagccggctcagatgtggaaccaggcccaggcagccctgcagaagattcctaccatg
cagatgtccatgaagcagcctcagcagcagcagcagcagcagcagcaggccttctacatg
gcggctcaggatcctctgaagctgtacgagcaccagctgcagccgccagctcagcctcag
ctctccaacatggacaagaagctcaagtaccctgacgtgaagatgcaggacttctactgg
gagccgtcgtacaggatgggcgacggcctggctgtgatggctgacaggatgaagaggcct
ccgccgggcgggatgtgttcagagcaggacgggcccagaggacccccgtttgaggacaac
aagagctcgcctcttctacctcctgacctgttaaaaactctagcagattttgaggaggag
gaggagctggtctttactaagcctcctgatttcttccaggccttggctggccctcttagc
actgctcctggaccaaatatatttctgccgaaccagaccagaatggagagcggccctgag
gtcgtcggccagtcgtcttctctgctgcccatatctggcttccccatgcaggagtacaac
cagaacagcatcttcagtcaggcctacggtaaaaacctgccgcccagctccaagcccgac
gctcccatgatgcaccaggagccgtcgctctactcgctgttcgaagggactccgtggtcg
ccgtccctccctgccagctcagaccactccaccccggccagccaatcccctcactcctcc
aaccccagcagcctgccatcctccccaccaacgcacaaccacggcgccatgcccttctcg
aacttcgggcccatcggtactccggacagccgggaccgccgggtggtggaccgctggaag
gccgacaagaccggagcagtaagtggcttcggtctggactacctgccggccgcagcctcc
tctgcagcttcagacaccagctggcaccaggccggatccaccggcagttcctggaccaat
caggactctccgatggaggagtcgtcctctactgtgctgctcgacagcctcaagtccatc
tggtcgagctccatgatgcagccgggcccgtcggcactggagcagctcctcctgcagcag
aagcagaagcagcagcgaggtcacggcgccatgaacccgcctcactga
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integrated database retrieval system
