Amphiprion ocellaris (clown anemonefish): 111580736
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Entry
111580736 CDS
T06018
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111580736 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111580736 (xab2)
03041 Spliceosome [BR:
aoce03041
]
111580736 (xab2)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111580736 (xab2)
Spliceosome [BR:
aoce03041
]
Complex B
Other components
Prp19-related factors
111580736 (xab2)
Complex C
111580736 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
TPR_MalT
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
111580736
NCBI-ProteinID:
XP_023144374
Ensembl:
ENSAOCG00000002422
LinkDB
All DBs
Position
19:complement(20931037..20940317)
Genome browser
AA seq
850 aa
AA seq
DB search
MPSLNGKADVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVTQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDDDDEDEDDEDQGPEEVQLEQKSVP
TAVFGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgttaaacggaaaagctgatgttatgtttgaggacgatgatctgccttatgaa
gaggagatcatcaggaatccatactccgtaaagtgctggatgcgttacatcgaattcaaa
cagaatggacccaaatccaccctcaacatgatttacgaaagggctctgaaagaactgcct
ggcagctataagctgtggtacaattacctgagagagaggcggaaacaagtcaaaggaaaa
tgtatcactgaaccagcctatgaagagatcaataactgccatgaaagggcactggtgttc
atgcataagatgcctagaatctggcttgactactgccagttccttgtgactcagtgcaag
ataacaagaagtcggcgaacatttgaccgtgcacttagagctcttcctgtaactcagcat
ccacgcatttggcctctgtatctccgctttgtccgaaacctgcccctgcctgagacagcc
atccgggtgtaccgcaggtacctcaagctttctccagaaaatgcagaggaatacatagac
tacctacggtctgttggtcgcttggatgaagctgctgtgagactcgcagctgttgtcaat
gatgaaagttttgtgtccaaagagggcaagtctaattatcagctgtggcatgaattatgt
gacctgatctcccagaatcctgacaaggtgacctctctgaatgtaggagccatcatccga
ggaggcctcacacgctttacagaccaacttggaaaactttggtgctctttagctgactat
tacatcaggagtggtcactttgagaaagcacgtgatgtttacgaggaggccatccttaca
gtggtaacagtaagggatttcacacaagtgtttgacagctacgctcagtttgaagaaagc
atgattgctgccaagatggagaccactgctgagatggggcaggatgaagatgatgacata
gacctggaacttagactggcgcgctttgagcagctgatagcccgacggcccctcctgttg
aacagtgtgctactgaggcaaaaccctcataacgtccatgagtggcacaagcgggtaaaa
ctgtatgagggaaatccacggcagatcatcaacacatacactgaggcagtacagaccgtg
gatccaatgaaggccacagggaagcctcactctctttgggtttcctttgctaaattctac
gaggaaaacgaacagctagatgatgccaggaccatctttgagaaggcgaccaaggtgaac
tacaagcaggtggatgaccttgctgcggtgtggtgcgaatatggagagatggagcttcgc
cacgagaactatgaacaggcactacgcatactcaggaaagctactgccatcccttccaag
aaagcagaatactttgatgcatctgagccagtccaaaacagagtctacaagtccttaaag
gtctggtctatgttggcggacttggaggaaagtcttggaacttttcagtccacaaaagca
gtgtatgaccgcattatagatctccgcattgccactccacagattatcatcaactatgcc
atgttccttgaagagcacaactactttgaggaaagctttaaagcatatgagcgtggtatc
gctctcttcaggtggccaaatgtttatgacatctggaacacatacctcaccaagttcatt
gatcgttatgggggcaagaagctggagagagccagagatttatttgagcaagccttggat
ggctgccctgccaagtttgccaaaaccatttatctattgtatgccaaactggaggaggag
tatgggttggcacgacacgccatggcggtctatgaaagagcaacgcaggcagtagaaact
gaggagagacatcacatgttcaacatctacatcaagcgagcagctgaaatttatggagtt
acatacaccagagcaatttaccagaaggctattgaggtccttcctgatgagcatgcaagg
gatatgtgcctacgatttgctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcgtactgctcccagatctgcgacccaagggtgacagctaatttctggcag
acctggaaagaatttgagattcggcatggaaatgaggacaccattagagagatgttgagg
atcaaacgcagtgtccaggctacttacaacacccaggtcaactttatgtcctctcagatg
cttaaggccacaacaagctccacaggcactgtgtcagaccttgctccaggtcagatggga
attgatgacatgaagatgctggagcagaaagcacagcagcttgctgctgaagctgagcag
gacaaacccaagcccaaagagaagattctctttgttaggagtgacacttctcgcagtgag
ttggctgagctttctaaacaagccaatcctgatgaaatcaatattgatgatgatgacgag
gatgaagatgacgaagaccaaggaccagaggaggtgcagctggaacagaagagcgtcccc
acagctgtctttggaggccttaaagatgactaa
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