Amphiprion ocellaris (clown anemonefish): 111583069
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Entry
111583069 CDS
T06018
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111583069
03041 Spliceosome [BR:
aoce03041
]
111583069
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
111583069
Spliceosome [BR:
aoce03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
111583069
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
RRM_Nup35
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
111583069
NCBI-ProteinID:
XP_023147761
Ensembl:
ENSAOCG00000011133
LinkDB
All DBs
Position
6:12884647..12895290
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AA seq
387 aa
AA seq
DB search
MMEDDQPRTLYVGNLSRDVTEPLILQVFQQIGPCKSCKMIVDTAGNDPYCFVEFYDHRHA
AASLAAMNGRKIMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEITTEDVKAAFGPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQHMGGQWLGGRQIRTNWATRKPPAPK
TTYENNSKHLSFDEVVSQSSPSNCTVYCGGVSTGLTEQLMRQTFSPFGQIMEVRVFPDKG
YSFVRFNSHESAAHAIVSVNGSSIEGHIVKCYWGKETPDMMNSMQQMSMPQQNKMGFAAA
QPYGQWGQWYGNGPQISQYVPNGWQVPTYGVYGQAWNQQGFNHLPASAGWTGMSAISNGG
VMEPTQGLNGSMLANQPGMGAAGYPTH
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacgatcaacccagaaccttgtatgtggggaatctgtccagggatgtcacc
gagcccctcatcctccaggtcttccaacagataggaccctgcaagagctgtaaaatgatc
gttgatacggctggaaatgatccatactgctttgtggagttctatgaccacaggcatgct
gctgcctcattggcagccatgaatggaaggaaaataatgggtaaggaagtcaaagtcaac
tgggccacgacgccaaccagccagaaaaaagacacaagtaatcactttcatgtgtttgtt
ggagacctcagcccagaaataaccacagaagacgtcaaagctgccttcggtccattcggc
aggatatcagatgctcgtgtggtgaaagacatggctacagggaaatctaaaggctatggt
tttgtgtctttctttaataaatgggacgcagagaacgccattcagcacatggggggtcag
tggttaggaggcagacagattcgaactaattgggccactagaaagccgcccgccccaaag
actacctatgaaaataactccaagcacctatcctttgatgaagtagtgagtcagtccagc
cccagtaactgcactgtgtattgtggtggagtcagcacaggactgacagagcaactgatg
agacagactttctccccttttggacaaatcatggaagtcagagtttttcctgacaaaggc
tattcatttgtgaggtttaactcccatgagtcagcagcccatgccattgtgtcagtgaat
ggctcttcaatagaaggccacatagtgaaatgctactggggtaaagagaccccggatatg
atgaactcaatgcagcagatgtctatgccccagcaaaacaagatgggcttcgctgcagcc
cagccctatggccagtggggccagtggtacggcaatgggccacagatcagccagtacgtc
ccgaatgggtggcaggtccccacttacggtgtctacggccaggcttggaaccagcagggc
ttcaatcacttaccggccagtgctgggtggactggcatgagcgccatcagtaacggtggc
gttatggagcctacacagggattgaatgggagtatgctagccaaccagcctggcatggga
gccgcaggataccccacacactga
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