Amphiprion ocellaris (clown anemonefish): 111583089
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Entry
111583089 CDS
T06018
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aoce03041
]
111583089 (prpf39)
Spliceosome [BR:
aoce03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
111583089 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_MalT
TPR_10
TPR_12
Ribophorin_II
OEP
HrpB1_HrpK
TPR_5
ARM_TT21_5th
TPR_11
PRIMA1
Motif
Other DBs
NCBI-GeneID:
111583089
NCBI-ProteinID:
XP_023147789
Ensembl:
ENSAOCG00000000639
LinkDB
All DBs
Position
12:complement(30284996..30294550)
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AA seq
783 aa
AA seq
DB search
MEDTGLQLSEDAITGMLDTESPAMESNGDAFLPDLPVLGQAADWSLDQVAPEPLSNILPE
DSDASQDAPGQEQQMNSTELGSVEKAVEQFQLASAQLFQEEQPPPPPPPPPPPQPAEEAE
PAAESQMNVEPEAAVPEDSQEGAEAAQVTEDGMELEEPSKETTQELTVPAEPEIPSEFDK
LFKGCEDNPEDFNGWVYLLQYVEQENAIPAVRKAFDLFFLRYPYCYGYWKKYADIEKKND
NIQVAEEVYRRGLQAIPLSVDLWLHYLNFIKENSDPNDPETEGRIRASYDHAVLAAGTDF
RSDRLWEAFINWETEQQKLANVTTIYDRILGIPTQLYSQHFQRFKDHVQTNNPKHFLSEE
EFVQLRLELSKSSLSAMVGDDGESNVPQEELPPGTEDLPDPAKRVTEIENMRHKVIEVRQ
EVFNHNEHEVSKRWAFEEGIKRPYFHVKALEKPQLNNWKEYLDFEIDNGTPERVVVLFER
CLIACALYEEFWIKYAKYLEGYSTDGVRHVYKKACTIHLPKKPAIHLLWAAFEEQQGNVE
EARSILKSLEATVPGLAMVRLRRVSLERRHGNLEEAEALLREAMESAKNETETSFYAVKL
ARQLMKVQRSLSKARKVLLEAIEKDQTSPKLYLNLLELEYSGDVTQNEAEILACFDRALK
SPMPIESRLLFSQRKVEFLEDFGSDINVLVAAYEEQQKLQKESEPTKRKAENGYDSSQEP
DAKRQRVDDGTVAAANTTMDMTANNSAYNYNWYQQQYGGWGQNSWGQYGQYGQYNQYYPP
PPT
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggaagatactggcctacaactctcagaggacgccattactggaatgctggacactgag
tcccctgccatggaaagcaatggggatgcctttcttcctgatctacccgttttagggcaa
gcagccgactggtccttggaccaggttgctccagagccgctctccaacatcttgcctgag
gactcggatgcatctcaggatgctccagggcaagagcagcaaatgaactccacagagctg
ggatctgtggagaaggctgtggaacagtttcagcttgccagtgcccagctcttccaagag
gagcagccgccacctcctcctccaccaccacccccaccacagccagcagaagaggcagaa
ccagcagcagagtctcagatgaatgtggagccagaggctgctgtaccggaagacagtcaa
gaaggggctgaggcagcgcaggtcactgaggatggcatggagctcgaagaaccatccaaa
gaaacaacacaagaattgactgttcctgcagagccagaaataccctcagaatttgacaaa
ctcttcaaaggatgtgaagacaacccagaagacttcaacggctgggtctacctgctgcag
tatgtggagcaagagaatgctatcccagctgtgagaaaagcattcgatctgttcttccta
cgctatccctactgctacggctactggaagaagtatgcagatatcgagaaaaagaacgac
aatatacaggttgcagaagaggtgtacagaagaggcttgcaggccatccctctcagtgtg
gacctgtggctgcactacctgaacttcatcaaagagaactcagatcctaatgacccagaa
actgaaggacgcattcgagcgtcctatgatcatgcagtgcttgcagcaggcacagacttc
cgctctgaccgtctatgggaggcttttataaactgggagacggagcagcagaaactggcc
aacgtcaccaccatctacgatcgcatcttgggcatcccaacccagctatattcccagcac
ttccagaggttcaaagatcacgtgcagaccaacaaccccaaacacttcttgtcggaagag
gagttcgttcagctgaggctcgagctctctaaatccagtctctcagcaatggtcggtgat
gatggagaatcgaatgttcctcaagaggagctaccacctgggacagaggatcttccagat
ccagctaagagagtgaccgagatcgagaacatgcgccacaaggtgatcgaggttcggcaa
gaagtgttcaaccacaacgaacatgaagtcagcaagcgatgggcctttgaggaagggatt
aagagaccttacttccatgtgaaagccttggagaagccacagctcaacaactggaaggag
tacctggacttcgaaattgacaacggaactccggagcgcgtggttgttctctttgaacgt
tgcctcatcgcctgtgcactctacgaggagttttggatcaagtatgcaaaatatctagag
ggctacagcactgatggtgtgagacatgtctacaagaaggcttgtaccatccacctgccc
aagaagccagccatccacctgttgtgggcagcttttgaggagcagcaaggcaacgtagag
gaggctcgcagcatcctgaagtccttggaagcaacggtcccggggctggctatggtgcgg
cttcgaagggtgagcctggagcgtcgtcacggtaacttggaggaagctgaggcgctgttg
agggaggcgatggagtcggcgaagaatgagactgagacgtcgttctatgctgtgaagcta
gccaggcagctgatgaaggtgcagaggagtctgagcaaggccaggaaggtgctactggaa
gctattgagaaagaccagacgagtcccaaactgtatctgaacctgcttgagctggagtac
agcggagatgtgacgcagaatgaggcggagatcttggcttgtttcgatcgagccctgaag
agcccgatgcccattgagtcccgcctcctcttctcccagcgcaaagtcgagttcctggaa
gactttggcagcgatatcaatgtgcttgttgctgcatatgaggaacaacagaaactacag
aaagagagcgagccaacaaagagaaaagcagagaacggatatgacagttctcaggaacct
gacgccaagaggcagcgtgtggacgacggtactgtggctgcagcgaacacgacgatggac
atgacagcaaacaactctgcgtacaactacaactggtaccagcaacaatatggtggttgg
ggacaaaactcctggggccagtacggccagtacggccagtataaccagtactacccgcct
cctcctacatga
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