Amphiprion ocellaris (clown anemonefish): 111583541
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Entry
111583541 CDS
T06018
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03030
DNA replication
aoce03410
Base excision repair
aoce03420
Nucleotide excision repair
aoce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111583541 (rfc1)
03410 Base excision repair
111583541 (rfc1)
03420 Nucleotide excision repair
111583541 (rfc1)
03430 Mismatch repair
111583541 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aoce03032
]
111583541 (rfc1)
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111583541 (rfc1)
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111583541 (rfc1)
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111583541 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_5
AAA_17
Rad17
RuvB_N
AAA_14
AAA_33
AAA_7
nSTAND3
NTPase_1
AAA_18
AAA_16
RNA_helicase
BRCT_2
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
111583541
NCBI-ProteinID:
XP_023148448
Ensembl:
ENSAOCG00000013843
LinkDB
All DBs
Position
4:complement(15941809..15955924)
Genome browser
AA seq
1184 aa
AA seq
DB search
MDIRRFFVPTLAKPAVQKPASNGNIKPDEKKKKNPLSSDEEVKKKKKETTKVNSSKTEEQ
SKDSEKKRKKHAVRVSDSDDEEPVRKSKKSPKDKPKTSKAEPPPKKDPVQYVSETDSDSD
NFQSLKTVSKSKQNSTAKRTKPEAESARPVAKEVKSPVKSSFTQGKTPPGPVTPKSTPPP
QPKQTPTSVLDYFGSGTIQRSDKKLVASTKRKAPTQDTDDLISDEEIARQLQMEEDMELE
KQVHEDEEFARTLAMLDEEPQAKKARKGSDEKQGRTATPKKSSTDSAAGSTSSLPKASGS
VSEDVISLSPKKNTTPVKTSSKLAMMKKKDQVKDKGTTSKTPTSAIKMEFSPKKEPLPSS
ISEKKFTPKAGTTPTALKTSPKKPESTSTSPDDAEKKKINTSAYRNYLNRDGPRALGSKE
VPQGAENCLEGCVFVLTGVMESMERDDAKALIERYGGKVTGNVSKKTTYLVQGRDSGVSK
LEKAESFGTKILDEDGLLELIRTKPGKKSKYEIAAEAESKASKTKTPPSQTSKSTPKAQK
ISPSKGNSRSPHTPSPSKTSLAQGHGARTQDSSTTPGRGSGHTARRELGLSSSSPSSSAP
GPSSSSTTGEGGSLLWVDKYRPRSLKTVIGQQGDQSCANKLLRWLQNWHRHHGGEAGKPA
VARFTKFGGGKDDGSGHKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLK
EVVAESLNNTSIENFYKGTSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKNSKIPI
ICMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGIKIPPPALNEIILASN
QDVRQVIHNLSMWSAKDKVMTYDQCRSDAASARKDMKLGPFDVCRKVFSSREETARMSLI
DKSDLFFHDYSLAPLFIQENYPYVRPAAAGGDMKAHLVLLSKTADSISDGDLVDRRIRSG
QNWSLLPTQAIYASVLPGELMRGYMAQFPVFPSWLGKNSSTSKHSRIVQELASHMSLKTL
SSRQAVNLDYLHYLRQALLSPLQKHGVEGASQAVQLLDDYQLIKEDVDSIMEISVWDKQP
DPYSKLDSKVKAAFTRTYNKEVHLTPYSLQAVKKGRRGGGGESELGGEDMGHDVQESEDE
GEGLKTDAMIKQKKAKTTKESNKEKKEDSGKGKGKGKGKGKVKK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgtaccgacattagccaaacctgcggtgcagaaaccagcc
tcaaatggaaacatcaaaccagatgagaagaagaagaagaatcctctgtcttcagatgaa
gaggtgaaaaagaaaaagaaagagaccacaaaggtcaacagctcaaaaacagaagagcaa
agcaaagatagtgagaaaaaacgaaagaagcatgcagtcagagtatcagactcagatgac
gaggagcctgtgaggaagtcaaagaaatcccccaaagacaaaccgaagaccagcaaggca
gagccgcctcctaaaaaagatcctgtgcagtatgtctctgaaacagactcggacagcgac
aacttccagtcactgaagacggtctccaaatccaagcagaacagcactgccaagaggacg
aagccagaggccgagagtgctcgtccagtagccaaagaagtaaagtctcctgtcaaatcg
tccttcacgcagggaaaaactcctcctgggcctgtaacccctaagtcaaccccacctcct
cagcccaaacagacccccacctcggtgctcgactacttcggcagtgggactattcaacgc
tcggacaagaaactggtagccagcaccaaacgaaaggctccaactcaagacacagatgac
ctgataagtgacgaggaaattgccagacagctgcagatggaagaggacatggagctggaa
aaacaggtccatgaggacgaggagtttgcccgaacactggccatgctggacgaagagcca
caggcgaagaaggctcgtaaaggatctgatgaaaaacaaggccgaaccgcaactcccaaa
aagagcagtacagactctgctgctggcagcaccagcagcctgcccaaggccagtggaagc
gtgtcagaggatgtgatcagtctgtctcccaagaagaacacaacccccgtcaaaaccagc
tccaaactggccatgatgaagaaaaaggaccaggtgaaggacaaaggaacaactagcaaa
acacccacttcggctataaaaatggaattctctcccaaaaaggagccccttccttcatcg
atatcagagaagaagttcacacccaaagcaggaacgacacccaccgcacttaaaacgtct
cccaagaaacctgagagcacaagtacgagtcccgatgacgcagagaaaaagaagatcaac
acttcagcttacaggaactacctcaacagagacggaccacgagctctgggctccaaggag
gttccacagggagcagaaaactgtttggagggctgtgtgtttgtgctgacgggcgtcatg
gaatcaatggagagagatgatgccaaagcgctcattgagcgttacggaggaaaagtgacg
ggcaacgtcagcaagaaaaccacctacctggtgcagggcagagacagcggagtctccaag
ctcgagaaggcggagagttttggcaccaagatcttggatgaagatggtctgttagagctg
atcagaaccaaaccagggaagaagtcaaagtacgagatcgctgcagaagctgagagcaaa
gcctcaaagaccaagactcccccgagccagacttcaaagagcacccccaaagcccagaag
atctctccctccaagggcaactccaggtcccctcacaccccgagcccctcaaagaccagc
ctggcacaaggtcacggtgccaggactcaagacagcagcaccacacctggaagaggctcc
ggtcacacagcccggagggagctgggcctttcctcctcttctccttcttcttcagcccca
ggaccatcatcttcgtcaacgacaggagagggcggcagtttgctgtgggtggacaagtac
cgtccacgctctctgaagactgtgatcggccagcagggcgatcagagctgcgccaacaag
ctgcttcgctggctgcagaactggcacaggcaccacggtggggaggcgggaaagccagca
gtggcacggtttactaagttcggaggagggaaagatgacggatcaggacacaaagctgct
ctgctgtctggacctccaggagtggggaagaccaccacagctgcactggtctgtgaggag
ttgggattcagctacgtggagatgaacgccagctgtactcgcagcaaaaacagcctgaag
gaagttgttgcagagtcactgaacaataccagcattgagaacttctacaaaggcacgtct
cagacagtgagcagtaaacacgtcctgatcatggatgagattgatggcatggcgggtaat
gaggaccgtggaggaatccaggagatgattggcctcatcaaaaattcaaagattcccatc
atctgcatgtgcaacgaccgaaaccaccagaagatcaggtcattggcaaactactgcttc
gatctgcgcttccagagaccgcgggtggaacagatcaagggagccatgatgtccattgct
ttcaaggagggaatcaagatcccgccaccagctctgaacgaaattattttggcctccaat
caggatgttcgtcaggtgatccacaacctgagcatgtggtcggccaaagacaaggtgatg
acgtacgaccagtgcaggtctgatgcggccagcgcccgcaaggacatgaagctgggaccg
tttgacgtgtgcaggaaggtgttcagctccagggaagagacggcccgcatgagcctcatc
gacaagtccgacctctttttccacgactactcactggcaccactgttcatccaggagaac
tacccatatgttcgaccagctgctgccggtggtgatatgaaggcccacctggtgttgctc
agtaagacagcagactccatctctgacggcgatctggtggacagacggatccgctcaggg
caaaactggtcactgctgcccacccaggctatctatgccagtgtgttaccaggcgagctc
atgagaggctacatggctcagtttccagtcttccccagctggctcgggaaaaactcctcc
accagtaagcattcccgcatcgtacaggagctggcctcacacatgagcttaaagacgctg
agcagcagacaggcggtgaacctggactacctgcactacctgcgacaggcgcttctaagt
ccactacagaaacacggagtggagggagccagtcaggctgtgcagctgctggacgattac
cagctcatcaaggaggacgtggacagcatcatggagatcagcgtctgggacaagcagccc
gacccttactccaaactggactccaaggtgaaggcggctttcacgcggacgtacaacaaa
gaggttcacttgacgccgtactcgctgcaagctgtgaagaaaggccgtcgaggtggcggg
ggagagtcagagttaggaggagaggacatgggccacgatgtccaagaatctgaggacgaa
ggggaaggcctcaaaactgatgctatgatcaaacaaaagaaggccaaaaccacaaaggag
tcaaataaggaaaagaaagaagattctgggaaggggaaaggaaagggcaaagggaaaggc
aaagtgaagaaatga
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integrated database retrieval system
